Strain Fitness in Methylophilus sp. DMC18 around GFF145

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF144 and GFF145 are separated by 46 nucleotidesGFF145 and GFF146 are separated by 16 nucleotidesGFF146 and GFF147 are separated by 9 nucleotidesGFF147 and GFF148 are separated by 10 nucleotides GFF144 - Chaperone protein HscA, at 145,325 to 147,199 GFF144 GFF145 - Iron-binding protein IscA, at 147,246 to 147,569 GFF145 GFF146 - Iron-sulfur cluster insertion protein ErpA, at 147,586 to 147,948 GFF146 GFF147 - Iron-sulfur cluster assembly scaffold protein IscU, at 147,958 to 148,377 GFF147 GFF148 - Cysteine desulfurase IscS, at 148,388 to 149,632 GFF148 Position (kb) 147 148Strain fitness (log2 ratio) -3 -2 -1 0 1at 146.598 kb on + strand, within GFF144at 146.598 kb on + strand, within GFF144at 146.598 kb on + strand, within GFF144at 146.599 kb on - strand, within GFF144at 146.599 kb on - strand, within GFF144at 146.628 kb on + strand, within GFF144at 146.629 kb on - strand, within GFF144at 146.743 kb on + strand, within GFF144at 146.744 kb on - strand, within GFF144at 146.880 kb on - strand, within GFF144at 146.912 kb on + strand, within GFF144at 146.912 kb on + strand, within GFF144at 146.912 kb on + strand, within GFF144at 146.913 kb on - strand, within GFF144at 146.913 kb on - strand, within GFF144at 146.913 kb on - strand, within GFF144at 146.915 kb on - strand, within GFF144at 146.915 kb on - strand, within GFF144at 146.915 kb on - strand, within GFF144at 147.008 kb on - strand, within GFF144at 147.025 kb on - strandat 147.122 kb on + strandat 147.123 kb on - strandat 147.123 kb on - strandat 147.123 kb on - strandat 147.200 kb on - strandat 147.200 kb on - strandat 147.215 kb on + strandat 147.216 kb on - strandat 147.247 kb on + strandat 147.305 kb on + strand, within GFF145at 147.306 kb on - strand, within GFF145at 147.359 kb on - strand, within GFF145at 147.359 kb on - strand, within GFF145at 147.379 kb on - strand, within GFF145at 147.392 kb on + strand, within GFF145at 147.393 kb on - strand, within GFF145at 147.451 kb on + strand, within GFF145at 147.451 kb on + strand, within GFF145at 147.589 kb on + strandat 147.639 kb on + strand, within GFF146at 147.674 kb on + strand, within GFF146at 147.675 kb on - strand, within GFF146at 147.679 kb on + strand, within GFF146at 147.679 kb on + strand, within GFF146at 147.679 kb on + strand, within GFF146at 147.679 kb on + strand, within GFF146at 147.679 kb on + strand, within GFF146at 147.680 kb on - strand, within GFF146at 147.698 kb on + strand, within GFF146at 147.698 kb on + strand, within GFF146at 147.698 kb on + strand, within GFF146at 147.719 kb on - strand, within GFF146at 147.719 kb on - strand, within GFF146at 147.719 kb on - strand, within GFF146at 147.824 kb on + strand, within GFF146at 147.824 kb on + strand, within GFF146at 147.916 kb on + strandat 147.917 kb on - strandat 147.959 kb on + strandat 148.196 kb on + strand, within GFF147at 148.196 kb on + strand, within GFF147at 148.196 kb on + strand, within GFF147at 148.196 kb on + strand, within GFF147at 148.197 kb on - strand, within GFF147at 148.197 kb on - strand, within GFF147at 148.293 kb on + strand, within GFF147at 148.368 kb on + strandat 148.368 kb on + strandat 148.370 kb on + strandat 148.371 kb on - strandat 148.371 kb on - strandat 148.377 kb on + strandat 148.377 kb on + strandat 148.377 kb on + strandat 148.377 kb on + strandat 148.377 kb on + strandat 148.378 kb on - strandat 148.378 kb on - strandat 148.378 kb on - strandat 148.378 kb on - strandat 148.378 kb on - strandat 148.378 kb on - strandat 148.378 kb on - strandat 148.378 kb on - strandat 148.390 kb on - strandat 148.558 kb on + strand, within GFF148at 148.559 kb on - strand, within GFF148at 148.560 kb on + strand, within GFF148

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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146,598 + GFF144 0.68 -1.8
146,598 + GFF144 0.68 -1.3
146,598 + GFF144 0.68 +0.0
146,599 - GFF144 0.68 -0.6
146,599 - GFF144 0.68 -0.5
146,628 + GFF144 0.69 -1.0
146,629 - GFF144 0.70 -0.1
146,743 + GFF144 0.76 -0.4
146,744 - GFF144 0.76 -1.0
146,880 - GFF144 0.83 -0.4
146,912 + GFF144 0.85 +1.0
146,912 + GFF144 0.85 -0.6
146,912 + GFF144 0.85 -0.6
146,913 - GFF144 0.85 -0.3
146,913 - GFF144 0.85 -1.5
146,913 - GFF144 0.85 -0.3
146,915 - GFF144 0.85 -2.1
146,915 - GFF144 0.85 -1.0
146,915 - GFF144 0.85 -1.0
147,008 - GFF144 0.90 -1.0
147,025 - -1.1
147,122 + -0.5
147,123 - +0.3
147,123 - +0.9
147,123 - +0.2
147,200 - -0.6
147,200 - -0.5
147,215 + -1.0
147,216 - -0.3
147,247 + -1.3
147,305 + GFF145 0.18 -0.8
147,306 - GFF145 0.19 +0.0
147,359 - GFF145 0.35 -1.8
147,359 - GFF145 0.35 -1.0
147,379 - GFF145 0.41 +0.0
147,392 + GFF145 0.45 -1.3
147,393 - GFF145 0.45 -1.2
147,451 + GFF145 0.63 -0.2
147,451 + GFF145 0.63 -0.2
147,589 + -0.5
147,639 + GFF146 0.15 -1.1
147,674 + GFF146 0.24 -1.0
147,675 - GFF146 0.25 -0.3
147,679 + GFF146 0.26 -1.9
147,679 + GFF146 0.26 -2.8
147,679 + GFF146 0.26 +0.3
147,679 + GFF146 0.26 -0.2
147,679 + GFF146 0.26 +0.4
147,680 - GFF146 0.26 +0.5
147,698 + GFF146 0.31 +0.6
147,698 + GFF146 0.31 -0.6
147,698 + GFF146 0.31 -0.4
147,719 - GFF146 0.37 +0.4
147,719 - GFF146 0.37 -0.6
147,719 - GFF146 0.37 -0.7
147,824 + GFF146 0.66 +0.0
147,824 + GFF146 0.66 +0.0
147,916 + -0.4
147,917 - -1.0
147,959 + -2.1
148,196 + GFF147 0.57 -0.1
148,196 + GFF147 0.57 +0.0
148,196 + GFF147 0.57 +0.0
148,196 + GFF147 0.57 +0.2
148,197 - GFF147 0.57 -0.7
148,197 - GFF147 0.57 -1.5
148,293 + GFF147 0.80 -1.8
148,368 + -2.0
148,368 + -0.6
148,370 + -0.6
148,371 - +0.7
148,371 - -1.2
148,377 + -1.6
148,377 + -1.0
148,377 + -0.5
148,377 + -0.3
148,377 + -1.0
148,378 - -1.0
148,378 - -1.0
148,378 - +0.4
148,378 - -0.3
148,378 - +0.0
148,378 - -1.1
148,378 - -0.9
148,378 - -0.9
148,390 - +0.3
148,558 + GFF148 0.14 -2.2
148,559 - GFF148 0.14 -0.7
148,560 + GFF148 0.14 -1.1

Or see this region's nucleotide sequence