Strain Fitness in Erwinia amylovora T8 around OLJFJH_17880

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17870 and OLJFJH_17875 are separated by 143 nucleotidesOLJFJH_17875 and OLJFJH_17880 are separated by 19 nucleotidesOLJFJH_17880 and OLJFJH_17890 are separated by 212 nucleotidesOLJFJH_17890 and OLJFJH_17895 are separated by 22 nucleotides OLJFJH_17870: OLJFJH_17870 - hypothetical protein, at 3,755,599 to 3,755,952 _17870 OLJFJH_17875: OLJFJH_17875 - Hha toxicity modulator TomB, at 3,756,096 to 3,756,488 _17875 OLJFJH_17880: OLJFJH_17880 - transcriptional regulator, at 3,756,508 to 3,756,726 _17880 OLJFJH_17890: OLJFJH_17890 - DNA-binding-1 domain-containing protein, at 3,756,939 to 3,757,343 _17890 OLJFJH_17895: OLJFJH_17895 - Type III secretion system lipoprotein chaperone (YscW), at 3,757,366 to 3,757,923 _17895 Position (kb) 3756 3757Strain fitness (log2 ratio) -2 -1 0 1 2at 3755.521 kb on + strandat 3755.522 kb on - strandat 3755.565 kb on + strandat 3755.654 kb on + strand, within OLJFJH_17870at 3755.687 kb on + strand, within OLJFJH_17870at 3755.778 kb on - strand, within OLJFJH_17870at 3755.806 kb on - strand, within OLJFJH_17870at 3755.806 kb on - strand, within OLJFJH_17870at 3755.837 kb on + strand, within OLJFJH_17870at 3755.884 kb on + strand, within OLJFJH_17870at 3755.884 kb on + strand, within OLJFJH_17870at 3755.992 kb on - strandat 3756.000 kb on - strandat 3756.083 kb on + strandat 3756.084 kb on - strandat 3756.162 kb on + strand, within OLJFJH_17875at 3756.316 kb on + strand, within OLJFJH_17875at 3756.366 kb on + strand, within OLJFJH_17875at 3756.366 kb on + strand, within OLJFJH_17875at 3756.388 kb on + strand, within OLJFJH_17875at 3756.389 kb on - strand, within OLJFJH_17875at 3756.611 kb on + strand, within OLJFJH_17880at 3756.611 kb on + strand, within OLJFJH_17880at 3756.678 kb on + strand, within OLJFJH_17880at 3756.695 kb on + strand, within OLJFJH_17880at 3756.733 kb on - strandat 3756.754 kb on + strandat 3756.754 kb on + strandat 3756.963 kb on + strandat 3756.963 kb on + strandat 3756.963 kb on + strandat 3756.964 kb on - strandat 3757.005 kb on + strand, within OLJFJH_17890at 3757.005 kb on + strand, within OLJFJH_17890at 3757.006 kb on - strand, within OLJFJH_17890at 3757.006 kb on - strand, within OLJFJH_17890at 3757.104 kb on + strand, within OLJFJH_17890at 3757.104 kb on + strand, within OLJFJH_17890at 3757.104 kb on + strand, within OLJFJH_17890at 3757.104 kb on + strand, within OLJFJH_17890at 3757.105 kb on - strand, within OLJFJH_17890at 3757.211 kb on - strand, within OLJFJH_17890at 3757.211 kb on - strand, within OLJFJH_17890at 3757.404 kb on + strandat 3757.413 kb on + strandat 3757.413 kb on + strandat 3757.429 kb on + strand, within OLJFJH_17895at 3757.429 kb on + strand, within OLJFJH_17895at 3757.543 kb on - strand, within OLJFJH_17895at 3757.543 kb on - strand, within OLJFJH_17895at 3757.562 kb on - strand, within OLJFJH_17895at 3757.562 kb on - strand, within OLJFJH_17895at 3757.687 kb on - strand, within OLJFJH_17895

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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3,755,521 + -0.0
3,755,522 - -0.0
3,755,565 + +1.3
3,755,654 + OLJFJH_17870 0.16 -0.4
3,755,687 + OLJFJH_17870 0.25 -0.1
3,755,778 - OLJFJH_17870 0.51 +1.2
3,755,806 - OLJFJH_17870 0.58 -1.3
3,755,806 - OLJFJH_17870 0.58 +0.5
3,755,837 + OLJFJH_17870 0.67 -0.6
3,755,884 + OLJFJH_17870 0.81 -0.0
3,755,884 + OLJFJH_17870 0.81 +0.3
3,755,992 - +1.6
3,756,000 - -0.4
3,756,083 + -0.2
3,756,084 - +1.8
3,756,162 + OLJFJH_17875 0.17 -0.7
3,756,316 + OLJFJH_17875 0.56 +0.6
3,756,366 + OLJFJH_17875 0.69 -0.0
3,756,366 + OLJFJH_17875 0.69 +0.0
3,756,388 + OLJFJH_17875 0.74 +0.5
3,756,389 - OLJFJH_17875 0.75 -0.0
3,756,611 + OLJFJH_17880 0.47 +0.2
3,756,611 + OLJFJH_17880 0.47 +0.3
3,756,678 + OLJFJH_17880 0.78 -1.0
3,756,695 + OLJFJH_17880 0.85 -2.6
3,756,733 - +0.0
3,756,754 + +0.1
3,756,754 + -0.0
3,756,963 + +0.0
3,756,963 + -0.3
3,756,963 + -0.5
3,756,964 - +0.1
3,757,005 + OLJFJH_17890 0.16 +0.1
3,757,005 + OLJFJH_17890 0.16 -0.9
3,757,006 - OLJFJH_17890 0.17 -0.5
3,757,006 - OLJFJH_17890 0.17 -0.5
3,757,104 + OLJFJH_17890 0.41 -0.6
3,757,104 + OLJFJH_17890 0.41 -0.6
3,757,104 + OLJFJH_17890 0.41 +0.4
3,757,104 + OLJFJH_17890 0.41 +0.4
3,757,105 - OLJFJH_17890 0.41 +0.2
3,757,211 - OLJFJH_17890 0.67 -0.6
3,757,211 - OLJFJH_17890 0.67 +0.1
3,757,404 + -0.1
3,757,413 + -0.7
3,757,413 + -0.3
3,757,429 + OLJFJH_17895 0.11 +1.0
3,757,429 + OLJFJH_17895 0.11 -0.2
3,757,543 - OLJFJH_17895 0.32 +0.2
3,757,543 - OLJFJH_17895 0.32 +0.3
3,757,562 - OLJFJH_17895 0.35 -0.9
3,757,562 - OLJFJH_17895 0.35 -0.2
3,757,687 - OLJFJH_17895 0.58 -0.0

Or see this region's nucleotide sequence