Strain Fitness in Erwinia amylovora T8 around OLJFJH_17830

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17820 and OLJFJH_17825 are separated by 160 nucleotidesOLJFJH_17825 and OLJFJH_17830 are separated by 67 nucleotidesOLJFJH_17830 and OLJFJH_17835 are separated by 170 nucleotidesOLJFJH_17835 and OLJFJH_17840 are separated by 73 nucleotidesOLJFJH_17840 and OLJFJH_17845 are separated by 7 nucleotides OLJFJH_17820: OLJFJH_17820 - adenine phosphoribosyltransferase, at 3,746,853 to 3,747,404 _17820 OLJFJH_17825: OLJFJH_17825 - DUF454 domain-containing protein, at 3,747,565 to 3,747,936 _17825 OLJFJH_17830: OLJFJH_17830 - prephenate dehydrogenase, at 3,748,004 to 3,748,540 _17830 OLJFJH_17835: OLJFJH_17835 - hypothetical protein, at 3,748,711 to 3,748,905 _17835 OLJFJH_17840: OLJFJH_17840 - pleiotropic regulatory protein RsmS, at 3,748,979 to 3,749,128 _17840 OLJFJH_17845: OLJFJH_17845 - multidrug efflux transporter transcriptional repressor AcrR, at 3,749,136 to 3,749,774 _17845 Position (kb) 3748 3749Strain fitness (log2 ratio) -1 0 1at 3747.043 kb on - strand, within OLJFJH_17820at 3747.043 kb on - strand, within OLJFJH_17820at 3747.106 kb on + strand, within OLJFJH_17820at 3747.225 kb on + strand, within OLJFJH_17820at 3747.236 kb on + strand, within OLJFJH_17820at 3747.237 kb on - strand, within OLJFJH_17820at 3747.237 kb on - strand, within OLJFJH_17820at 3747.258 kb on + strand, within OLJFJH_17820at 3747.258 kb on + strand, within OLJFJH_17820at 3747.258 kb on + strand, within OLJFJH_17820at 3747.259 kb on - strand, within OLJFJH_17820at 3747.259 kb on - strand, within OLJFJH_17820at 3747.405 kb on - strandat 3747.610 kb on - strand, within OLJFJH_17825at 3747.687 kb on + strand, within OLJFJH_17825at 3747.842 kb on - strand, within OLJFJH_17825at 3747.892 kb on + strand, within OLJFJH_17825at 3747.892 kb on + strand, within OLJFJH_17825at 3747.892 kb on + strand, within OLJFJH_17825at 3748.161 kb on + strand, within OLJFJH_17830at 3748.440 kb on + strand, within OLJFJH_17830at 3748.440 kb on + strand, within OLJFJH_17830at 3748.441 kb on - strand, within OLJFJH_17830at 3748.441 kb on - strand, within OLJFJH_17830at 3748.552 kb on - strandat 3748.592 kb on + strandat 3748.638 kb on + strandat 3748.638 kb on + strandat 3748.639 kb on - strandat 3748.667 kb on + strandat 3748.668 kb on - strandat 3748.668 kb on - strandat 3748.668 kb on - strandat 3748.708 kb on - strandat 3748.708 kb on - strandat 3748.708 kb on - strandat 3748.710 kb on + strandat 3748.722 kb on + strandat 3748.808 kb on + strand, within OLJFJH_17835at 3748.842 kb on + strand, within OLJFJH_17835at 3748.842 kb on + strand, within OLJFJH_17835at 3748.843 kb on - strand, within OLJFJH_17835at 3748.848 kb on + strand, within OLJFJH_17835at 3748.849 kb on - strand, within OLJFJH_17835at 3748.852 kb on + strand, within OLJFJH_17835at 3748.853 kb on - strand, within OLJFJH_17835at 3748.853 kb on - strand, within OLJFJH_17835at 3748.939 kb on - strandat 3748.958 kb on + strandat 3748.958 kb on + strandat 3748.958 kb on + strandat 3748.958 kb on - strandat 3748.959 kb on - strandat 3748.959 kb on - strandat 3748.959 kb on - strandat 3748.978 kb on + strandat 3748.978 kb on + strandat 3748.979 kb on - strandat 3748.979 kb on - strandat 3749.029 kb on + strand, within OLJFJH_17840at 3749.035 kb on - strand, within OLJFJH_17840at 3749.035 kb on - strand, within OLJFJH_17840at 3749.084 kb on - strand, within OLJFJH_17840at 3749.088 kb on + strand, within OLJFJH_17840at 3749.088 kb on + strand, within OLJFJH_17840at 3749.089 kb on - strand, within OLJFJH_17840at 3749.089 kb on - strand, within OLJFJH_17840at 3749.089 kb on - strand, within OLJFJH_17840at 3749.089 kb on - strand, within OLJFJH_17840at 3749.164 kb on + strandat 3749.164 kb on + strandat 3749.165 kb on - strandat 3749.181 kb on + strandat 3749.181 kb on + strandat 3749.181 kb on + strandat 3749.181 kb on + strandat 3749.234 kb on + strand, within OLJFJH_17845at 3749.238 kb on + strand, within OLJFJH_17845at 3749.266 kb on + strand, within OLJFJH_17845at 3749.267 kb on - strand, within OLJFJH_17845at 3749.330 kb on + strand, within OLJFJH_17845at 3749.331 kb on - strand, within OLJFJH_17845at 3749.352 kb on + strand, within OLJFJH_17845at 3749.375 kb on - strand, within OLJFJH_17845at 3749.434 kb on + strand, within OLJFJH_17845at 3749.435 kb on - strand, within OLJFJH_17845at 3749.491 kb on + strand, within OLJFJH_17845at 3749.491 kb on + strand, within OLJFJH_17845at 3749.492 kb on - strand, within OLJFJH_17845at 3749.492 kb on - strand, within OLJFJH_17845at 3749.492 kb on - strand, within OLJFJH_17845at 3749.492 kb on - strand, within OLJFJH_17845at 3749.492 kb on - strand, within OLJFJH_17845

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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3,747,043 - OLJFJH_17820 0.34 -0.0
3,747,043 - OLJFJH_17820 0.34 -0.0
3,747,106 + OLJFJH_17820 0.46 -0.1
3,747,225 + OLJFJH_17820 0.67 -1.6
3,747,236 + OLJFJH_17820 0.69 -0.4
3,747,237 - OLJFJH_17820 0.70 -0.1
3,747,237 - OLJFJH_17820 0.70 +1.0
3,747,258 + OLJFJH_17820 0.73 -0.3
3,747,258 + OLJFJH_17820 0.73 +1.2
3,747,258 + OLJFJH_17820 0.73 +0.6
3,747,259 - OLJFJH_17820 0.74 -0.1
3,747,259 - OLJFJH_17820 0.74 -0.3
3,747,405 - +0.2
3,747,610 - OLJFJH_17825 0.12 +0.2
3,747,687 + OLJFJH_17825 0.33 -0.5
3,747,842 - OLJFJH_17825 0.74 +0.4
3,747,892 + OLJFJH_17825 0.88 +0.4
3,747,892 + OLJFJH_17825 0.88 +0.3
3,747,892 + OLJFJH_17825 0.88 -1.6
3,748,161 + OLJFJH_17830 0.29 -0.6
3,748,440 + OLJFJH_17830 0.81 -1.5
3,748,440 + OLJFJH_17830 0.81 +0.5
3,748,441 - OLJFJH_17830 0.81 -0.0
3,748,441 - OLJFJH_17830 0.81 -0.3
3,748,552 - +0.1
3,748,592 + +0.2
3,748,638 + -0.6
3,748,638 + -0.9
3,748,639 - -0.7
3,748,667 + +0.0
3,748,668 - +0.4
3,748,668 - -0.3
3,748,668 - -0.3
3,748,708 - +0.4
3,748,708 - -0.4
3,748,708 - -0.2
3,748,710 + -0.3
3,748,722 + +0.1
3,748,808 + OLJFJH_17835 0.50 +0.2
3,748,842 + OLJFJH_17835 0.67 -0.1
3,748,842 + OLJFJH_17835 0.67 -0.0
3,748,843 - OLJFJH_17835 0.68 +0.1
3,748,848 + OLJFJH_17835 0.70 -0.1
3,748,849 - OLJFJH_17835 0.71 -0.2
3,748,852 + OLJFJH_17835 0.72 +0.3
3,748,853 - OLJFJH_17835 0.73 -0.2
3,748,853 - OLJFJH_17835 0.73 +0.3
3,748,939 - +0.4
3,748,958 + +0.3
3,748,958 + -0.2
3,748,958 + +0.0
3,748,958 - -0.2
3,748,959 - +0.2
3,748,959 - -0.1
3,748,959 - +0.4
3,748,978 + -0.0
3,748,978 + +0.2
3,748,979 - -0.4
3,748,979 - +0.4
3,749,029 + OLJFJH_17840 0.33 +0.3
3,749,035 - OLJFJH_17840 0.37 +0.1
3,749,035 - OLJFJH_17840 0.37 +0.3
3,749,084 - OLJFJH_17840 0.70 +0.0
3,749,088 + OLJFJH_17840 0.73 +0.7
3,749,088 + OLJFJH_17840 0.73 -0.3
3,749,089 - OLJFJH_17840 0.73 -1.3
3,749,089 - OLJFJH_17840 0.73 -0.4
3,749,089 - OLJFJH_17840 0.73 -0.1
3,749,089 - OLJFJH_17840 0.73 -0.1
3,749,164 + -0.2
3,749,164 + -0.3
3,749,165 - -0.0
3,749,181 + -0.0
3,749,181 + -1.0
3,749,181 + -0.3
3,749,181 + +0.3
3,749,234 + OLJFJH_17845 0.15 +0.1
3,749,238 + OLJFJH_17845 0.16 +0.1
3,749,266 + OLJFJH_17845 0.20 -0.4
3,749,267 - OLJFJH_17845 0.21 -0.1
3,749,330 + OLJFJH_17845 0.30 +0.2
3,749,331 - OLJFJH_17845 0.31 -0.1
3,749,352 + OLJFJH_17845 0.34 -1.5
3,749,375 - OLJFJH_17845 0.37 +0.1
3,749,434 + OLJFJH_17845 0.47 -0.0
3,749,435 - OLJFJH_17845 0.47 -0.1
3,749,491 + OLJFJH_17845 0.56 +0.2
3,749,491 + OLJFJH_17845 0.56 -0.4
3,749,492 - OLJFJH_17845 0.56 -0.3
3,749,492 - OLJFJH_17845 0.56 +0.5
3,749,492 - OLJFJH_17845 0.56 +0.2
3,749,492 - OLJFJH_17845 0.56 -0.6
3,749,492 - OLJFJH_17845 0.56 -0.7

Or see this region's nucleotide sequence