Strain Fitness in Erwinia amylovora T8 around OLJFJH_17650

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17645 and OLJFJH_17650 overlap by 4 nucleotidesOLJFJH_17650 and OLJFJH_17655 are separated by 18 nucleotides OLJFJH_17645: OLJFJH_17645 - Putative permease, at 3,712,988 to 3,714,403 _17645 OLJFJH_17650: OLJFJH_17650 - ABC transporter ATP-binding protein, at 3,714,400 to 3,715,086 _17650 OLJFJH_17655: OLJFJH_17655 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 3,715,105 to 3,715,707 _17655 Position (kb) 3714 3715 3716Strain fitness (log2 ratio) -1 0 1at 3713.430 kb on - strand, within OLJFJH_17645at 3713.446 kb on + strand, within OLJFJH_17645at 3713.446 kb on + strand, within OLJFJH_17645at 3713.450 kb on + strand, within OLJFJH_17645at 3713.450 kb on + strand, within OLJFJH_17645at 3713.451 kb on - strand, within OLJFJH_17645at 3713.451 kb on - strand, within OLJFJH_17645at 3713.722 kb on + strand, within OLJFJH_17645at 3713.769 kb on + strand, within OLJFJH_17645at 3713.778 kb on + strand, within OLJFJH_17645at 3713.778 kb on + strand, within OLJFJH_17645at 3713.812 kb on + strand, within OLJFJH_17645at 3713.813 kb on - strand, within OLJFJH_17645at 3713.947 kb on + strand, within OLJFJH_17645at 3713.977 kb on + strand, within OLJFJH_17645at 3713.989 kb on + strand, within OLJFJH_17645at 3713.989 kb on + strand, within OLJFJH_17645at 3714.151 kb on + strand, within OLJFJH_17645at 3714.152 kb on - strand, within OLJFJH_17645at 3714.196 kb on + strand, within OLJFJH_17645at 3714.755 kb on - strand, within OLJFJH_17650at 3715.050 kb on + strandat 3715.050 kb on + strandat 3715.051 kb on - strandat 3715.103 kb on + strandat 3715.260 kb on - strand, within OLJFJH_17655at 3715.472 kb on - strand, within OLJFJH_17655at 3715.483 kb on + strand, within OLJFJH_17655at 3715.507 kb on + strand, within OLJFJH_17655

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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3,713,430 - OLJFJH_17645 0.31 +0.1
3,713,446 + OLJFJH_17645 0.32 +0.4
3,713,446 + OLJFJH_17645 0.32 +0.3
3,713,450 + OLJFJH_17645 0.33 +0.1
3,713,450 + OLJFJH_17645 0.33 -0.5
3,713,451 - OLJFJH_17645 0.33 -0.2
3,713,451 - OLJFJH_17645 0.33 +0.2
3,713,722 + OLJFJH_17645 0.52 +0.1
3,713,769 + OLJFJH_17645 0.55 +0.2
3,713,778 + OLJFJH_17645 0.56 -0.2
3,713,778 + OLJFJH_17645 0.56 +0.5
3,713,812 + OLJFJH_17645 0.58 +0.3
3,713,813 - OLJFJH_17645 0.58 -0.3
3,713,947 + OLJFJH_17645 0.68 +0.6
3,713,977 + OLJFJH_17645 0.70 +0.2
3,713,989 + OLJFJH_17645 0.71 +0.0
3,713,989 + OLJFJH_17645 0.71 -1.0
3,714,151 + OLJFJH_17645 0.82 -0.5
3,714,152 - OLJFJH_17645 0.82 +0.1
3,714,196 + OLJFJH_17645 0.85 +0.2
3,714,755 - OLJFJH_17650 0.52 -0.8
3,715,050 + -0.8
3,715,050 + -0.2
3,715,051 - +0.7
3,715,103 + -0.1
3,715,260 - OLJFJH_17655 0.26 -0.1
3,715,472 - OLJFJH_17655 0.61 +0.1
3,715,483 + OLJFJH_17655 0.63 +0.8
3,715,507 + OLJFJH_17655 0.67 -0.1

Or see this region's nucleotide sequence