Strain Fitness in Erwinia amylovora T8 around OLJFJH_17550

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17530 and OLJFJH_17535 overlap by 4 nucleotidesOLJFJH_17535 and OLJFJH_17540 overlap by 4 nucleotidesOLJFJH_17540 and OLJFJH_17545 overlap by 4 nucleotidesOLJFJH_17545 and OLJFJH_17550 overlap by 4 nucleotidesOLJFJH_17550 and OLJFJH_17555 overlap by 8 nucleotidesOLJFJH_17555 and OLJFJH_17560 overlap by 10 nucleotides OLJFJH_17530: OLJFJH_17530 - hypothetical protein, at 3,698,344 to 3,698,955 _17530 OLJFJH_17535: OLJFJH_17535 - Hypothetical bacteriophage protein, at 3,698,952 to 3,699,167 _17535 OLJFJH_17540: OLJFJH_17540 - hypothetical protein, at 3,699,164 to 3,699,340 _17540 OLJFJH_17545: OLJFJH_17545 - ORF6N domain-containing protein, at 3,699,337 to 3,699,921 _17545 OLJFJH_17550: OLJFJH_17550 - hypothetical protein, at 3,699,918 to 3,700,097 _17550 OLJFJH_17555: OLJFJH_17555 - host cell division inhibitor Icd-like protein, at 3,700,090 to 3,700,986 _17555 OLJFJH_17560: OLJFJH_17560 - DUF4222 domain-containing protein, at 3,700,977 to 3,701,150 _17560 Position (kb) 3699 3700 3701Strain fitness (log2 ratio) -2 -1 0 1at 3698.986 kb on + strand, within OLJFJH_17535at 3698.986 kb on + strand, within OLJFJH_17535at 3698.986 kb on + strand, within OLJFJH_17535at 3698.987 kb on - strand, within OLJFJH_17535at 3699.139 kb on - strand, within OLJFJH_17535at 3699.258 kb on + strand, within OLJFJH_17540at 3699.259 kb on - strand, within OLJFJH_17540at 3699.259 kb on - strand, within OLJFJH_17540at 3699.260 kb on + strand, within OLJFJH_17540at 3699.260 kb on + strand, within OLJFJH_17540at 3699.260 kb on + strand, within OLJFJH_17540at 3699.374 kb on - strandat 3699.415 kb on + strand, within OLJFJH_17545at 3699.415 kb on + strand, within OLJFJH_17545at 3699.478 kb on - strand, within OLJFJH_17545at 3699.594 kb on - strand, within OLJFJH_17545at 3699.594 kb on - strand, within OLJFJH_17545at 3699.628 kb on + strand, within OLJFJH_17545at 3699.640 kb on - strand, within OLJFJH_17545at 3699.649 kb on - strand, within OLJFJH_17545at 3699.662 kb on + strand, within OLJFJH_17545at 3699.709 kb on + strand, within OLJFJH_17545at 3699.710 kb on - strand, within OLJFJH_17545at 3699.710 kb on - strand, within OLJFJH_17545at 3699.734 kb on - strand, within OLJFJH_17545at 3699.734 kb on - strand, within OLJFJH_17545at 3699.736 kb on + strand, within OLJFJH_17545at 3699.737 kb on - strand, within OLJFJH_17545at 3699.904 kb on + strandat 3699.905 kb on - strandat 3699.954 kb on - strand, within OLJFJH_17550at 3699.981 kb on + strand, within OLJFJH_17550at 3700.087 kb on + strandat 3700.088 kb on - strandat 3700.091 kb on + strandat 3700.091 kb on + strandat 3700.091 kb on + strandat 3700.091 kb on + strandat 3700.091 kb on + strandat 3700.092 kb on - strandat 3700.314 kb on + strand, within OLJFJH_17555at 3700.315 kb on - strand, within OLJFJH_17555at 3700.315 kb on - strand, within OLJFJH_17555at 3700.315 kb on - strand, within OLJFJH_17555at 3700.315 kb on - strand, within OLJFJH_17555at 3700.338 kb on + strand, within OLJFJH_17555at 3700.380 kb on + strand, within OLJFJH_17555at 3700.381 kb on - strand, within OLJFJH_17555at 3700.429 kb on - strand, within OLJFJH_17555at 3700.431 kb on + strand, within OLJFJH_17555at 3700.447 kb on + strand, within OLJFJH_17555at 3700.447 kb on + strand, within OLJFJH_17555at 3700.450 kb on + strand, within OLJFJH_17555at 3700.451 kb on - strand, within OLJFJH_17555at 3700.451 kb on - strand, within OLJFJH_17555at 3700.451 kb on - strand, within OLJFJH_17555at 3700.451 kb on - strand, within OLJFJH_17555at 3700.732 kb on - strand, within OLJFJH_17555at 3700.799 kb on - strand, within OLJFJH_17555at 3700.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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3,698,986 + OLJFJH_17535 0.16 -0.2
3,698,986 + OLJFJH_17535 0.16 +0.6
3,698,986 + OLJFJH_17535 0.16 -0.5
3,698,987 - OLJFJH_17535 0.16 -0.6
3,699,139 - OLJFJH_17535 0.87 +0.2
3,699,258 + OLJFJH_17540 0.53 -0.1
3,699,259 - OLJFJH_17540 0.54 +0.1
3,699,259 - OLJFJH_17540 0.54 -0.2
3,699,260 + OLJFJH_17540 0.54 +0.1
3,699,260 + OLJFJH_17540 0.54 -0.1
3,699,260 + OLJFJH_17540 0.54 +0.5
3,699,374 - -0.5
3,699,415 + OLJFJH_17545 0.13 +0.1
3,699,415 + OLJFJH_17545 0.13 +0.7
3,699,478 - OLJFJH_17545 0.24 +1.1
3,699,594 - OLJFJH_17545 0.44 -0.1
3,699,594 - OLJFJH_17545 0.44 -0.5
3,699,628 + OLJFJH_17545 0.50 -0.5
3,699,640 - OLJFJH_17545 0.52 +0.0
3,699,649 - OLJFJH_17545 0.53 -0.1
3,699,662 + OLJFJH_17545 0.56 -0.1
3,699,709 + OLJFJH_17545 0.64 -0.1
3,699,710 - OLJFJH_17545 0.64 +0.3
3,699,710 - OLJFJH_17545 0.64 +0.6
3,699,734 - OLJFJH_17545 0.68 +0.2
3,699,734 - OLJFJH_17545 0.68 +0.8
3,699,736 + OLJFJH_17545 0.68 +0.0
3,699,737 - OLJFJH_17545 0.68 +0.3
3,699,904 + +0.3
3,699,905 - +0.0
3,699,954 - OLJFJH_17550 0.20 -0.5
3,699,981 + OLJFJH_17550 0.35 -0.3
3,700,087 + -0.1
3,700,088 - +0.3
3,700,091 + +0.2
3,700,091 + +0.1
3,700,091 + +0.1
3,700,091 + -0.0
3,700,091 + +0.0
3,700,092 - -0.2
3,700,314 + OLJFJH_17555 0.25 +0.1
3,700,315 - OLJFJH_17555 0.25 +0.2
3,700,315 - OLJFJH_17555 0.25 -2.0
3,700,315 - OLJFJH_17555 0.25 -0.4
3,700,315 - OLJFJH_17555 0.25 -0.2
3,700,338 + OLJFJH_17555 0.28 -0.1
3,700,380 + OLJFJH_17555 0.32 -0.1
3,700,381 - OLJFJH_17555 0.32 +1.0
3,700,429 - OLJFJH_17555 0.38 -0.1
3,700,431 + OLJFJH_17555 0.38 +0.2
3,700,447 + OLJFJH_17555 0.40 +0.0
3,700,447 + OLJFJH_17555 0.40 +0.2
3,700,450 + OLJFJH_17555 0.40 +0.5
3,700,451 - OLJFJH_17555 0.40 +0.3
3,700,451 - OLJFJH_17555 0.40 +0.3
3,700,451 - OLJFJH_17555 0.40 +0.3
3,700,451 - OLJFJH_17555 0.40 +0.8
3,700,732 - OLJFJH_17555 0.72 -0.4
3,700,799 - OLJFJH_17555 0.79 +0.1
3,700,930 + +0.4

Or see this region's nucleotide sequence