Strain Fitness in Erwinia amylovora T8 around OLJFJH_16960

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_16950 and OLJFJH_16955 are separated by 231 nucleotidesOLJFJH_16955 and OLJFJH_16960 are separated by 17 nucleotidesOLJFJH_16960 and OLJFJH_16965 overlap by 4 nucleotidesOLJFJH_16965 and OLJFJH_16970 overlap by 7 nucleotides OLJFJH_16950: OLJFJH_16950 - 2-oxoglutarate dehydrogenase E1 component, at 3,582,821 to 3,585,628 _16950 OLJFJH_16955: OLJFJH_16955 - succinate dehydrogenase iron-sulfur subunit, at 3,585,860 to 3,586,576 _16955 OLJFJH_16960: OLJFJH_16960 - succinate dehydrogenase flavoprotein subunit, at 3,586,594 to 3,588,360 _16960 OLJFJH_16965: OLJFJH_16965 - succinate dehydrogenase membrane anchor subunit, at 3,588,357 to 3,588,707 _16965 OLJFJH_16970: OLJFJH_16970 - succinate dehydrogenase cytochrome b556 subunit, at 3,588,701 to 3,589,090 _16970 Position (kb) 3586 3587 3588 3589Strain fitness (log2 ratio) -3 -2 -1 0 1at 3585.723 kb on - strandat 3585.814 kb on - strandat 3585.933 kb on - strand, within OLJFJH_16955at 3585.950 kb on - strand, within OLJFJH_16955at 3585.950 kb on - strand, within OLJFJH_16955at 3585.969 kb on - strand, within OLJFJH_16955at 3586.236 kb on + strand, within OLJFJH_16955at 3586.352 kb on - strand, within OLJFJH_16955at 3586.352 kb on - strand, within OLJFJH_16955at 3586.583 kb on - strandat 3586.583 kb on - strandat 3586.595 kb on + strandat 3586.596 kb on - strandat 3586.596 kb on - strandat 3586.596 kb on - strandat 3586.700 kb on - strandat 3587.131 kb on + strand, within OLJFJH_16960at 3587.132 kb on - strand, within OLJFJH_16960at 3587.132 kb on - strand, within OLJFJH_16960at 3587.297 kb on + strand, within OLJFJH_16960at 3587.297 kb on + strand, within OLJFJH_16960at 3587.298 kb on - strand, within OLJFJH_16960at 3587.298 kb on - strand, within OLJFJH_16960at 3587.544 kb on + strand, within OLJFJH_16960at 3587.713 kb on - strand, within OLJFJH_16960at 3587.735 kb on + strand, within OLJFJH_16960at 3587.736 kb on - strand, within OLJFJH_16960at 3587.781 kb on + strand, within OLJFJH_16960at 3587.782 kb on - strand, within OLJFJH_16960at 3587.787 kb on - strand, within OLJFJH_16960at 3587.913 kb on - strand, within OLJFJH_16960at 3587.919 kb on + strand, within OLJFJH_16960at 3588.017 kb on + strand, within OLJFJH_16960at 3588.022 kb on - strand, within OLJFJH_16960at 3588.099 kb on + strand, within OLJFJH_16960at 3588.099 kb on + strand, within OLJFJH_16960at 3588.099 kb on + strand, within OLJFJH_16960at 3588.100 kb on - strand, within OLJFJH_16960at 3588.100 kb on - strand, within OLJFJH_16960at 3588.100 kb on - strand, within OLJFJH_16960at 3588.100 kb on - strand, within OLJFJH_16960at 3588.100 kb on - strand, within OLJFJH_16960at 3588.102 kb on - strand, within OLJFJH_16960at 3588.102 kb on - strand, within OLJFJH_16960at 3588.102 kb on - strand, within OLJFJH_16960at 3588.152 kb on + strand, within OLJFJH_16960at 3588.156 kb on + strand, within OLJFJH_16960at 3588.157 kb on - strand, within OLJFJH_16960at 3588.157 kb on - strand, within OLJFJH_16960at 3588.157 kb on - strand, within OLJFJH_16960at 3588.184 kb on - strandat 3588.254 kb on - strandat 3588.389 kb on - strandat 3588.456 kb on - strand, within OLJFJH_16965at 3588.456 kb on - strand, within OLJFJH_16965at 3588.459 kb on - strand, within OLJFJH_16965at 3588.459 kb on - strand, within OLJFJH_16965at 3588.460 kb on + strand, within OLJFJH_16965at 3588.460 kb on + strand, within OLJFJH_16965at 3588.536 kb on + strand, within OLJFJH_16965at 3588.537 kb on - strand, within OLJFJH_16965at 3588.575 kb on - strand, within OLJFJH_16965at 3588.575 kb on - strand, within OLJFJH_16965at 3588.600 kb on - strand, within OLJFJH_16965at 3588.613 kb on + strand, within OLJFJH_16965at 3588.613 kb on + strand, within OLJFJH_16965at 3588.614 kb on - strand, within OLJFJH_16965at 3588.614 kb on - strand, within OLJFJH_16965at 3588.614 kb on - strand, within OLJFJH_16965at 3588.708 kb on - strandat 3588.818 kb on - strand, within OLJFJH_16970at 3588.839 kb on - strand, within OLJFJH_16970at 3588.862 kb on + strand, within OLJFJH_16970at 3589.173 kb on - strandat 3589.359 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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3,585,723 - -0.3
3,585,814 - -0.8
3,585,933 - OLJFJH_16955 0.10 -0.4
3,585,950 - OLJFJH_16955 0.13 -0.9
3,585,950 - OLJFJH_16955 0.13 -1.8
3,585,969 - OLJFJH_16955 0.15 -0.2
3,586,236 + OLJFJH_16955 0.52 -1.0
3,586,352 - OLJFJH_16955 0.69 -0.3
3,586,352 - OLJFJH_16955 0.69 -1.7
3,586,583 - +0.7
3,586,583 - -1.6
3,586,595 + -1.2
3,586,596 - +0.3
3,586,596 - -0.7
3,586,596 - -0.4
3,586,700 - -0.0
3,587,131 + OLJFJH_16960 0.30 -1.3
3,587,132 - OLJFJH_16960 0.30 -2.6
3,587,132 - OLJFJH_16960 0.30 -1.4
3,587,297 + OLJFJH_16960 0.40 -1.8
3,587,297 + OLJFJH_16960 0.40 -0.0
3,587,298 - OLJFJH_16960 0.40 -0.8
3,587,298 - OLJFJH_16960 0.40 -0.2
3,587,544 + OLJFJH_16960 0.54 -1.0
3,587,713 - OLJFJH_16960 0.63 -1.4
3,587,735 + OLJFJH_16960 0.65 -3.3
3,587,736 - OLJFJH_16960 0.65 +1.0
3,587,781 + OLJFJH_16960 0.67 +0.4
3,587,782 - OLJFJH_16960 0.67 -0.9
3,587,787 - OLJFJH_16960 0.68 -0.4
3,587,913 - OLJFJH_16960 0.75 -1.3
3,587,919 + OLJFJH_16960 0.75 -0.8
3,588,017 + OLJFJH_16960 0.81 -1.6
3,588,022 - OLJFJH_16960 0.81 -1.6
3,588,099 + OLJFJH_16960 0.85 -1.0
3,588,099 + OLJFJH_16960 0.85 +1.0
3,588,099 + OLJFJH_16960 0.85 -1.8
3,588,100 - OLJFJH_16960 0.85 -1.8
3,588,100 - OLJFJH_16960 0.85 -2.8
3,588,100 - OLJFJH_16960 0.85 -0.3
3,588,100 - OLJFJH_16960 0.85 -0.4
3,588,100 - OLJFJH_16960 0.85 -0.0
3,588,102 - OLJFJH_16960 0.85 -1.4
3,588,102 - OLJFJH_16960 0.85 -1.8
3,588,102 - OLJFJH_16960 0.85 -0.9
3,588,152 + OLJFJH_16960 0.88 -1.6
3,588,156 + OLJFJH_16960 0.88 -0.2
3,588,157 - OLJFJH_16960 0.88 -1.3
3,588,157 - OLJFJH_16960 0.88 -1.5
3,588,157 - OLJFJH_16960 0.88 -2.9
3,588,184 - -0.6
3,588,254 - -1.2
3,588,389 - +1.0
3,588,456 - OLJFJH_16965 0.28 -1.6
3,588,456 - OLJFJH_16965 0.28 -0.7
3,588,459 - OLJFJH_16965 0.29 -1.8
3,588,459 - OLJFJH_16965 0.29 -2.7
3,588,460 + OLJFJH_16965 0.29 -1.0
3,588,460 + OLJFJH_16965 0.29 -1.2
3,588,536 + OLJFJH_16965 0.51 -0.3
3,588,537 - OLJFJH_16965 0.51 -0.6
3,588,575 - OLJFJH_16965 0.62 -1.1
3,588,575 - OLJFJH_16965 0.62 -2.6
3,588,600 - OLJFJH_16965 0.69 -1.3
3,588,613 + OLJFJH_16965 0.73 -1.8
3,588,613 + OLJFJH_16965 0.73 -0.0
3,588,614 - OLJFJH_16965 0.73 -1.0
3,588,614 - OLJFJH_16965 0.73 -0.0
3,588,614 - OLJFJH_16965 0.73 -2.0
3,588,708 - +0.3
3,588,818 - OLJFJH_16970 0.30 -0.2
3,588,839 - OLJFJH_16970 0.35 -1.2
3,588,862 + OLJFJH_16970 0.41 -2.2
3,589,173 - -0.5
3,589,359 + -0.2

Or see this region's nucleotide sequence