Strain Fitness in Erwinia amylovora T8 around OLJFJH_16180

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_16170 and OLJFJH_16175 are separated by 7 nucleotidesOLJFJH_16175 and OLJFJH_16180 are separated by 199 nucleotidesOLJFJH_16180 and OLJFJH_16185 are separated by 118 nucleotides OLJFJH_16170: OLJFJH_16170 - recombination factor protein RarA, at 3,411,592 to 3,412,935 _16170 OLJFJH_16175: OLJFJH_16175 - outer membrane lipoprotein chaperone LolA, at 3,412,943 to 3,413,554 _16175 OLJFJH_16180: OLJFJH_16180 - cell division protein FtsK, at 3,413,754 to 3,417,344 _16180 OLJFJH_16185: OLJFJH_16185 - leucine-responsive transcriptional regulator Lrp, at 3,417,463 to 3,417,957 _16185 Position (kb) 3413 3414 3415 3416 3417 3418Strain fitness (log2 ratio) -3 -2 -1 0 1at 3412.853 kb on + strandat 3412.854 kb on - strandat 3412.854 kb on - strandat 3412.878 kb on + strandat 3412.878 kb on + strandat 3412.879 kb on - strandat 3412.879 kb on - strandat 3412.930 kb on - strandat 3413.692 kb on + strandat 3413.755 kb on + strandat 3413.755 kb on + strandat 3413.756 kb on - strandat 3413.756 kb on - strandat 3414.123 kb on - strand, within OLJFJH_16180at 3414.123 kb on - strand, within OLJFJH_16180at 3414.133 kb on + strand, within OLJFJH_16180at 3414.134 kb on - strand, within OLJFJH_16180at 3414.134 kb on - strand, within OLJFJH_16180at 3414.246 kb on - strand, within OLJFJH_16180at 3414.406 kb on + strand, within OLJFJH_16180at 3414.406 kb on + strand, within OLJFJH_16180at 3414.406 kb on + strand, within OLJFJH_16180at 3414.407 kb on - strand, within OLJFJH_16180at 3414.407 kb on - strand, within OLJFJH_16180at 3414.407 kb on - strand, within OLJFJH_16180at 3414.517 kb on + strand, within OLJFJH_16180at 3414.527 kb on + strand, within OLJFJH_16180at 3414.531 kb on - strand, within OLJFJH_16180at 3414.580 kb on - strand, within OLJFJH_16180at 3414.647 kb on + strand, within OLJFJH_16180at 3414.721 kb on + strand, within OLJFJH_16180at 3414.722 kb on - strand, within OLJFJH_16180at 3414.808 kb on - strand, within OLJFJH_16180at 3414.837 kb on - strand, within OLJFJH_16180at 3414.910 kb on + strand, within OLJFJH_16180at 3414.952 kb on + strand, within OLJFJH_16180at 3414.952 kb on + strand, within OLJFJH_16180at 3414.953 kb on - strand, within OLJFJH_16180at 3415.739 kb on + strand, within OLJFJH_16180at 3415.739 kb on + strand, within OLJFJH_16180at 3415.740 kb on - strand, within OLJFJH_16180at 3415.770 kb on + strand, within OLJFJH_16180at 3415.771 kb on - strand, within OLJFJH_16180at 3415.993 kb on + strand, within OLJFJH_16180at 3415.994 kb on - strand, within OLJFJH_16180at 3416.011 kb on - strand, within OLJFJH_16180at 3416.063 kb on + strand, within OLJFJH_16180at 3416.458 kb on - strand, within OLJFJH_16180at 3416.695 kb on + strand, within OLJFJH_16180at 3416.695 kb on + strand, within OLJFJH_16180at 3417.519 kb on - strand, within OLJFJH_16185at 3417.519 kb on - strand, within OLJFJH_16185at 3417.852 kb on + strand, within OLJFJH_16185at 3417.953 kb on - strandat 3417.971 kb on - strandat 3417.972 kb on + strandat 3417.972 kb on + strandat 3417.973 kb on - strandat 3418.004 kb on + strandat 3418.029 kb on - strandat 3418.029 kb on - strandat 3418.033 kb on - strandat 3418.041 kb on + strandat 3418.041 kb on + strandat 3418.042 kb on - strandat 3418.057 kb on - strandat 3418.115 kb on + strandat 3418.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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3,412,853 + +0.2
3,412,854 - +0.0
3,412,854 - +0.1
3,412,878 + +0.6
3,412,878 + -0.5
3,412,879 - +0.0
3,412,879 - +0.0
3,412,930 - +0.1
3,413,692 + -0.2
3,413,755 + +0.2
3,413,755 + +0.1
3,413,756 - -0.9
3,413,756 - +0.4
3,414,123 - OLJFJH_16180 0.10 -1.0
3,414,123 - OLJFJH_16180 0.10 -0.6
3,414,133 + OLJFJH_16180 0.11 -3.1
3,414,134 - OLJFJH_16180 0.11 -1.3
3,414,134 - OLJFJH_16180 0.11 +0.0
3,414,246 - OLJFJH_16180 0.14 -1.0
3,414,406 + OLJFJH_16180 0.18 -2.4
3,414,406 + OLJFJH_16180 0.18 -0.4
3,414,406 + OLJFJH_16180 0.18 -1.4
3,414,407 - OLJFJH_16180 0.18 -2.2
3,414,407 - OLJFJH_16180 0.18 -1.0
3,414,407 - OLJFJH_16180 0.18 -0.2
3,414,517 + OLJFJH_16180 0.21 -1.7
3,414,527 + OLJFJH_16180 0.22 -1.0
3,414,531 - OLJFJH_16180 0.22 -1.0
3,414,580 - OLJFJH_16180 0.23 -3.0
3,414,647 + OLJFJH_16180 0.25 +0.7
3,414,721 + OLJFJH_16180 0.27 -2.2
3,414,722 - OLJFJH_16180 0.27 -1.7
3,414,808 - OLJFJH_16180 0.29 -2.0
3,414,837 - OLJFJH_16180 0.30 -1.8
3,414,910 + OLJFJH_16180 0.32 -2.0
3,414,952 + OLJFJH_16180 0.33 -1.6
3,414,952 + OLJFJH_16180 0.33 -0.3
3,414,953 - OLJFJH_16180 0.33 -1.7
3,415,739 + OLJFJH_16180 0.55 +0.0
3,415,739 + OLJFJH_16180 0.55 -1.6
3,415,740 - OLJFJH_16180 0.55 -1.6
3,415,770 + OLJFJH_16180 0.56 -1.0
3,415,771 - OLJFJH_16180 0.56 -0.4
3,415,993 + OLJFJH_16180 0.62 +0.0
3,415,994 - OLJFJH_16180 0.62 -1.3
3,416,011 - OLJFJH_16180 0.63 -1.2
3,416,063 + OLJFJH_16180 0.64 +0.6
3,416,458 - OLJFJH_16180 0.75 +1.4
3,416,695 + OLJFJH_16180 0.82 +0.0
3,416,695 + OLJFJH_16180 0.82 -0.8
3,417,519 - OLJFJH_16185 0.11 -0.1
3,417,519 - OLJFJH_16185 0.11 +0.1
3,417,852 + OLJFJH_16185 0.79 +0.6
3,417,953 - +0.8
3,417,971 - +0.6
3,417,972 + +1.0
3,417,972 + +0.0
3,417,973 - -0.1
3,418,004 + -0.3
3,418,029 - +0.2
3,418,029 - -0.1
3,418,033 - -0.1
3,418,041 + -0.4
3,418,041 + +0.4
3,418,042 - +0.1
3,418,057 - +0.2
3,418,115 + +0.4
3,418,316 - +0.2

Or see this region's nucleotide sequence