Strain Fitness in Erwinia amylovora T8 around OLJFJH_15185

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15180 and OLJFJH_15185 are separated by 82 nucleotidesOLJFJH_15185 and OLJFJH_15190 are separated by 236 nucleotidesOLJFJH_15190 and OLJFJH_15195 overlap by 50 nucleotidesOLJFJH_15195 and OLJFJH_15200 are separated by 170 nucleotides OLJFJH_15180: OLJFJH_15180 - alpha alpha-trehalase, at 3,204,613 to 3,206,289 _15180 OLJFJH_15185: OLJFJH_15185 - GlsB/YeaQ/YmgE family stress response membrane protein, at 3,206,372 to 3,206,620 _15185 OLJFJH_15190: OLJFJH_15190 - T3SS-YcgR-PilZN domain-containing protein, at 3,206,857 to 3,207,132 _15190 OLJFJH_15195: OLJFJH_15195 - hypothetical protein, at 3,207,083 to 3,207,358 _15195 OLJFJH_15200: OLJFJH_15200 - membrane-bound lytic murein transglycosylase EmtA, at 3,207,529 to 3,208,164 _15200 Position (kb) 3206 3207Strain fitness (log2 ratio) -2 -1 0 1 2at 3205.412 kb on + strand, within OLJFJH_15180at 3205.723 kb on + strand, within OLJFJH_15180at 3205.862 kb on - strand, within OLJFJH_15180at 3205.862 kb on - strand, within OLJFJH_15180at 3205.956 kb on - strand, within OLJFJH_15180at 3206.095 kb on + strand, within OLJFJH_15180at 3206.095 kb on + strand, within OLJFJH_15180at 3206.095 kb on + strand, within OLJFJH_15180at 3206.095 kb on + strand, within OLJFJH_15180at 3206.096 kb on - strand, within OLJFJH_15180at 3206.096 kb on - strand, within OLJFJH_15180at 3206.096 kb on - strand, within OLJFJH_15180at 3206.096 kb on - strand, within OLJFJH_15180at 3206.096 kb on - strand, within OLJFJH_15180at 3206.096 kb on - strand, within OLJFJH_15180at 3206.100 kb on + strand, within OLJFJH_15180at 3206.100 kb on + strand, within OLJFJH_15180at 3206.125 kb on + strandat 3206.248 kb on - strandat 3206.479 kb on + strand, within OLJFJH_15185at 3206.480 kb on - strand, within OLJFJH_15185at 3206.676 kb on + strandat 3206.678 kb on + strandat 3206.715 kb on + strandat 3206.720 kb on + strandat 3206.724 kb on - strandat 3206.743 kb on - strandat 3206.752 kb on - strandat 3206.758 kb on + strandat 3206.825 kb on - strandat 3206.833 kb on + strandat 3206.834 kb on - strandat 3206.834 kb on - strandat 3206.834 kb on - strandat 3206.834 kb on - strandat 3206.837 kb on + strandat 3206.936 kb on - strand, within OLJFJH_15190at 3206.943 kb on + strand, within OLJFJH_15190at 3206.943 kb on + strand, within OLJFJH_15190at 3206.943 kb on + strand, within OLJFJH_15190at 3206.943 kb on + strand, within OLJFJH_15190at 3206.944 kb on - strand, within OLJFJH_15190at 3206.944 kb on - strand, within OLJFJH_15190at 3207.024 kb on + strand, within OLJFJH_15190at 3207.080 kb on + strand, within OLJFJH_15190at 3207.080 kb on + strand, within OLJFJH_15190at 3207.081 kb on - strand, within OLJFJH_15190at 3207.081 kb on - strand, within OLJFJH_15190at 3207.082 kb on + strand, within OLJFJH_15190at 3207.082 kb on + strand, within OLJFJH_15190at 3207.083 kb on - strandat 3207.174 kb on - strand, within OLJFJH_15195at 3207.179 kb on + strand, within OLJFJH_15195at 3207.179 kb on + strand, within OLJFJH_15195at 3207.179 kb on + strand, within OLJFJH_15195at 3207.179 kb on + strand, within OLJFJH_15195at 3207.180 kb on - strand, within OLJFJH_15195at 3207.180 kb on - strand, within OLJFJH_15195at 3207.180 kb on - strand, within OLJFJH_15195at 3207.180 kb on - strand, within OLJFJH_15195at 3207.180 kb on - strand, within OLJFJH_15195at 3207.183 kb on + strand, within OLJFJH_15195at 3207.183 kb on + strand, within OLJFJH_15195at 3207.184 kb on - strand, within OLJFJH_15195at 3207.184 kb on - strand, within OLJFJH_15195at 3207.350 kb on + strandat 3207.351 kb on - strandat 3207.351 kb on - strandat 3207.390 kb on + strandat 3207.403 kb on - strandat 3207.535 kb on - strandat 3207.535 kb on - strandat 3207.538 kb on - strandat 3207.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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3,205,412 + OLJFJH_15180 0.48 -0.1
3,205,723 + OLJFJH_15180 0.66 -0.1
3,205,862 - OLJFJH_15180 0.74 -0.1
3,205,862 - OLJFJH_15180 0.74 +0.0
3,205,956 - OLJFJH_15180 0.80 -0.1
3,206,095 + OLJFJH_15180 0.88 +0.2
3,206,095 + OLJFJH_15180 0.88 -1.9
3,206,095 + OLJFJH_15180 0.88 -0.5
3,206,095 + OLJFJH_15180 0.88 -0.1
3,206,096 - OLJFJH_15180 0.88 +0.3
3,206,096 - OLJFJH_15180 0.88 +0.5
3,206,096 - OLJFJH_15180 0.88 -0.1
3,206,096 - OLJFJH_15180 0.88 -0.4
3,206,096 - OLJFJH_15180 0.88 -0.5
3,206,096 - OLJFJH_15180 0.88 +0.4
3,206,100 + OLJFJH_15180 0.89 +0.2
3,206,100 + OLJFJH_15180 0.89 +0.1
3,206,125 + +0.1
3,206,248 - +0.2
3,206,479 + OLJFJH_15185 0.43 -0.4
3,206,480 - OLJFJH_15185 0.43 -1.3
3,206,676 + -0.2
3,206,678 + -0.2
3,206,715 + -0.2
3,206,720 + +0.0
3,206,724 - -0.0
3,206,743 - +0.7
3,206,752 - -0.5
3,206,758 + -0.0
3,206,825 - -0.3
3,206,833 + -0.1
3,206,834 - -0.6
3,206,834 - +0.1
3,206,834 - -0.1
3,206,834 - -0.2
3,206,837 + +0.1
3,206,936 - OLJFJH_15190 0.29 +0.2
3,206,943 + OLJFJH_15190 0.31 -0.1
3,206,943 + OLJFJH_15190 0.31 +2.0
3,206,943 + OLJFJH_15190 0.31 -0.4
3,206,943 + OLJFJH_15190 0.31 +0.2
3,206,944 - OLJFJH_15190 0.32 -0.5
3,206,944 - OLJFJH_15190 0.32 -0.5
3,207,024 + OLJFJH_15190 0.61 -0.6
3,207,080 + OLJFJH_15190 0.81 +0.0
3,207,080 + OLJFJH_15190 0.81 +0.3
3,207,081 - OLJFJH_15190 0.81 +0.1
3,207,081 - OLJFJH_15190 0.81 +0.1
3,207,082 + OLJFJH_15190 0.82 -1.1
3,207,082 + OLJFJH_15190 0.82 +0.0
3,207,083 - +0.2
3,207,174 - OLJFJH_15195 0.33 +0.1
3,207,179 + OLJFJH_15195 0.35 -0.3
3,207,179 + OLJFJH_15195 0.35 +0.1
3,207,179 + OLJFJH_15195 0.35 -0.6
3,207,179 + OLJFJH_15195 0.35 -0.3
3,207,180 - OLJFJH_15195 0.35 -0.2
3,207,180 - OLJFJH_15195 0.35 -0.5
3,207,180 - OLJFJH_15195 0.35 -0.0
3,207,180 - OLJFJH_15195 0.35 -0.3
3,207,180 - OLJFJH_15195 0.35 -1.2
3,207,183 + OLJFJH_15195 0.36 -0.2
3,207,183 + OLJFJH_15195 0.36 -0.1
3,207,184 - OLJFJH_15195 0.37 +0.4
3,207,184 - OLJFJH_15195 0.37 +0.1
3,207,350 + -0.2
3,207,351 - -0.4
3,207,351 - -0.6
3,207,390 + -1.0
3,207,403 - +0.1
3,207,535 - -0.1
3,207,535 - -0.1
3,207,538 - -0.3
3,207,543 - +0.7

Or see this region's nucleotide sequence