Strain Fitness in Erwinia amylovora T8 around OLJFJH_15115

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15110 and OLJFJH_15115 are separated by 670 nucleotidesOLJFJH_15115 and OLJFJH_15120 are separated by 15 nucleotidesOLJFJH_15120 and OLJFJH_15125 are separated by 356 nucleotides OLJFJH_15110: OLJFJH_15110 - hypothetical protein, at 3,189,535 to 3,189,828 _15110 OLJFJH_15115: OLJFJH_15115 - YgdI/YgdR family lipoprotein, at 3,190,499 to 3,190,732 _15115 OLJFJH_15120: OLJFJH_15120 - YgdI/YgdR family lipoprotein, at 3,190,748 to 3,190,978 _15120 OLJFJH_15125: OLJFJH_15125 - two-component system sensor histidine kinase DcuS, at 3,191,335 to 3,192,975 _15125 Position (kb) 3190 3191Strain fitness (log2 ratio) -1 0 1 2at 3189.499 kb on + strandat 3189.499 kb on + strandat 3189.500 kb on - strandat 3189.500 kb on - strandat 3189.538 kb on + strandat 3189.567 kb on + strand, within OLJFJH_15110at 3189.622 kb on - strand, within OLJFJH_15110at 3189.622 kb on - strand, within OLJFJH_15110at 3189.622 kb on - strand, within OLJFJH_15110at 3189.651 kb on + strand, within OLJFJH_15110at 3189.651 kb on + strand, within OLJFJH_15110at 3189.652 kb on - strand, within OLJFJH_15110at 3189.705 kb on - strand, within OLJFJH_15110at 3189.744 kb on + strand, within OLJFJH_15110at 3189.744 kb on + strand, within OLJFJH_15110at 3189.745 kb on - strand, within OLJFJH_15110at 3189.859 kb on + strandat 3189.860 kb on - strandat 3189.938 kb on + strandat 3189.970 kb on + strandat 3189.971 kb on - strandat 3190.065 kb on + strandat 3190.066 kb on - strandat 3190.139 kb on + strandat 3190.140 kb on - strandat 3190.149 kb on - strandat 3190.167 kb on + strandat 3190.190 kb on + strandat 3190.190 kb on + strandat 3190.215 kb on + strandat 3190.216 kb on - strandat 3190.395 kb on + strandat 3190.399 kb on + strandat 3190.456 kb on + strandat 3190.507 kb on + strandat 3190.655 kb on + strand, within OLJFJH_15115at 3190.657 kb on + strand, within OLJFJH_15115at 3190.676 kb on - strand, within OLJFJH_15115at 3190.711 kb on + strandat 3190.733 kb on + strandat 3190.753 kb on + strandat 3190.758 kb on + strandat 3190.773 kb on + strand, within OLJFJH_15120at 3190.774 kb on - strand, within OLJFJH_15120at 3190.774 kb on - strand, within OLJFJH_15120at 3190.823 kb on + strand, within OLJFJH_15120at 3190.829 kb on - strand, within OLJFJH_15120at 3190.853 kb on - strand, within OLJFJH_15120at 3190.883 kb on - strand, within OLJFJH_15120at 3190.905 kb on - strand, within OLJFJH_15120at 3190.977 kb on - strandat 3191.012 kb on - strandat 3191.107 kb on + strandat 3191.107 kb on + strandat 3191.159 kb on + strandat 3191.233 kb on + strandat 3191.246 kb on + strandat 3191.246 kb on + strandat 3191.257 kb on + strandat 3191.258 kb on - strandat 3191.258 kb on - strandat 3191.388 kb on + strandat 3191.389 kb on - strandat 3191.453 kb on - strandat 3191.496 kb on + strandat 3191.497 kb on - strandat 3191.607 kb on + strand, within OLJFJH_15125at 3191.607 kb on + strand, within OLJFJH_15125at 3191.608 kb on - strand, within OLJFJH_15125at 3191.608 kb on - strand, within OLJFJH_15125at 3191.608 kb on - strand, within OLJFJH_15125at 3191.610 kb on + strand, within OLJFJH_15125at 3191.610 kb on + strand, within OLJFJH_15125at 3191.670 kb on + strand, within OLJFJH_15125at 3191.679 kb on - strand, within OLJFJH_15125

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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3,189,499 + +0.2
3,189,499 + -0.4
3,189,500 - -0.6
3,189,500 - -0.2
3,189,538 + +0.9
3,189,567 + OLJFJH_15110 0.11 +0.3
3,189,622 - OLJFJH_15110 0.30 -1.0
3,189,622 - OLJFJH_15110 0.30 +0.5
3,189,622 - OLJFJH_15110 0.30 +0.8
3,189,651 + OLJFJH_15110 0.39 -0.1
3,189,651 + OLJFJH_15110 0.39 -0.3
3,189,652 - OLJFJH_15110 0.40 -0.3
3,189,705 - OLJFJH_15110 0.58 -0.6
3,189,744 + OLJFJH_15110 0.71 -1.0
3,189,744 + OLJFJH_15110 0.71 -0.5
3,189,745 - OLJFJH_15110 0.71 -0.1
3,189,859 + -0.6
3,189,860 - -0.4
3,189,938 + -0.3
3,189,970 + -0.1
3,189,971 - +0.1
3,190,065 + -0.4
3,190,066 - +0.3
3,190,139 + -0.4
3,190,140 - -0.1
3,190,149 - +0.4
3,190,167 + +1.0
3,190,190 + +0.3
3,190,190 + +0.1
3,190,215 + -0.5
3,190,216 - -0.2
3,190,395 + +0.7
3,190,399 + -1.0
3,190,456 + +0.1
3,190,507 + -0.0
3,190,655 + OLJFJH_15115 0.67 -0.6
3,190,657 + OLJFJH_15115 0.68 -0.7
3,190,676 - OLJFJH_15115 0.76 -0.6
3,190,711 + -0.5
3,190,733 + +0.2
3,190,753 + -0.1
3,190,758 + +0.1
3,190,773 + OLJFJH_15120 0.11 -0.2
3,190,774 - OLJFJH_15120 0.11 -0.3
3,190,774 - OLJFJH_15120 0.11 -0.1
3,190,823 + OLJFJH_15120 0.32 +0.2
3,190,829 - OLJFJH_15120 0.35 -0.1
3,190,853 - OLJFJH_15120 0.45 -0.7
3,190,883 - OLJFJH_15120 0.58 +0.1
3,190,905 - OLJFJH_15120 0.68 +1.8
3,190,977 - +0.0
3,191,012 - +0.2
3,191,107 + +0.2
3,191,107 + +0.1
3,191,159 + +1.0
3,191,233 + -0.3
3,191,246 + +0.6
3,191,246 + -0.4
3,191,257 + +0.3
3,191,258 - +0.4
3,191,258 - +0.5
3,191,388 + +0.6
3,191,389 - -0.7
3,191,453 - -0.1
3,191,496 + -0.2
3,191,497 - -1.3
3,191,607 + OLJFJH_15125 0.17 -0.8
3,191,607 + OLJFJH_15125 0.17 -0.4
3,191,608 - OLJFJH_15125 0.17 -0.0
3,191,608 - OLJFJH_15125 0.17 -0.4
3,191,608 - OLJFJH_15125 0.17 +2.0
3,191,610 + OLJFJH_15125 0.17 -0.2
3,191,610 + OLJFJH_15125 0.17 +0.2
3,191,670 + OLJFJH_15125 0.20 -0.1
3,191,679 - OLJFJH_15125 0.21 -0.8

Or see this region's nucleotide sequence