Strain Fitness in Erwinia amylovora T8 around OLJFJH_14980

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_14975 and OLJFJH_14980 are separated by 68 nucleotidesOLJFJH_14980 and OLJFJH_14985 are separated by 47 nucleotides OLJFJH_14975: OLJFJH_14975 - IpaD/SipD/SspD family type III secretion system needle tip protein, at 3,164,752 to 3,165,903 _14975 OLJFJH_14980: OLJFJH_14980 - type III secretion system protein, at 3,165,972 to 3,167,021 _14980 OLJFJH_14985: OLJFJH_14985 - cell division protein FtsQ, at 3,167,069 to 3,168,970 _14985 Position (kb) 3165 3166 3167 3168Strain fitness (log2 ratio) -1 0 1at 3165.243 kb on - strand, within OLJFJH_14975at 3165.329 kb on - strand, within OLJFJH_14975at 3165.351 kb on - strand, within OLJFJH_14975at 3165.417 kb on + strand, within OLJFJH_14975at 3165.464 kb on - strand, within OLJFJH_14975at 3165.668 kb on - strand, within OLJFJH_14975at 3166.288 kb on - strand, within OLJFJH_14980at 3166.637 kb on - strand, within OLJFJH_14980at 3166.857 kb on + strand, within OLJFJH_14980at 3167.561 kb on - strand, within OLJFJH_14985at 3167.789 kb on + strand, within OLJFJH_14985at 3167.837 kb on - strand, within OLJFJH_14985

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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3,165,243 - OLJFJH_14975 0.43 +0.1
3,165,329 - OLJFJH_14975 0.50 -0.4
3,165,351 - OLJFJH_14975 0.52 -0.5
3,165,417 + OLJFJH_14975 0.58 +0.0
3,165,464 - OLJFJH_14975 0.62 +0.0
3,165,668 - OLJFJH_14975 0.80 -1.6
3,166,288 - OLJFJH_14980 0.30 +0.1
3,166,637 - OLJFJH_14980 0.63 -1.0
3,166,857 + OLJFJH_14980 0.84 -1.0
3,167,561 - OLJFJH_14985 0.26 -0.9
3,167,789 + OLJFJH_14985 0.38 +0.3
3,167,837 - OLJFJH_14985 0.40 +0.2

Or see this region's nucleotide sequence