Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_14965 and OLJFJH_14970 are separated by 160 nucleotides OLJFJH_14970 and OLJFJH_14975 are separated by 3 nucleotides OLJFJH_14975 and OLJFJH_14980 are separated by 68 nucleotides
OLJFJH_14965: OLJFJH_14965 - type III secretion system protein, at 3,162,999 to 3,164,498
_14965
OLJFJH_14970: OLJFJH_14970 - hypothetical protein, at 3,164,659 to 3,164,748
_14970
OLJFJH_14975: OLJFJH_14975 - IpaD/SipD/SspD family type III secretion system needle tip protein, at 3,164,752 to 3,165,903
_14975
OLJFJH_14980: OLJFJH_14980 - type III secretion system protein, at 3,165,972 to 3,167,021
_14980
Position (kb) 3164
3165
3166 Strain fitness (log2 ratio) -1
0
1 at 3164.684 kb on + strand, within OLJFJH_14970 at 3164.726 kb on - strand, within OLJFJH_14970 at 3164.844 kb on + strand at 3165.243 kb on - strand, within OLJFJH_14975 at 3165.329 kb on - strand, within OLJFJH_14975 at 3165.351 kb on - strand, within OLJFJH_14975 at 3165.417 kb on + strand, within OLJFJH_14975 at 3165.464 kb on - strand, within OLJFJH_14975 at 3165.668 kb on - strand, within OLJFJH_14975 at 3166.288 kb on - strand, within OLJFJH_14980 at 3166.637 kb on - strand, within OLJFJH_14980 at 3166.857 kb on + strand, within OLJFJH_14980
Per-strain Table
Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1) remove 3,164,684 + OLJFJH_14970 0.28 +0.7 3,164,726 - OLJFJH_14970 0.74 -0.6 3,164,844 + -0.2 3,165,243 - OLJFJH_14975 0.43 +0.1 3,165,329 - OLJFJH_14975 0.50 -0.4 3,165,351 - OLJFJH_14975 0.52 -0.5 3,165,417 + OLJFJH_14975 0.58 +0.0 3,165,464 - OLJFJH_14975 0.62 +0.0 3,165,668 - OLJFJH_14975 0.80 -1.6 3,166,288 - OLJFJH_14980 0.30 +0.1 3,166,637 - OLJFJH_14980 0.63 -1.0 3,166,857 + OLJFJH_14980 0.84 -1.0
Or see this region's nucleotide sequence