Strain Fitness in Erwinia amylovora T8 around OLJFJH_11065

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_11055 and OLJFJH_11060 overlap by 1 nucleotidesOLJFJH_11060 and OLJFJH_11065 overlap by 1 nucleotidesOLJFJH_11065 and OLJFJH_11070 are separated by 9 nucleotides OLJFJH_11055: OLJFJH_11055 - sensor histidine kinase, at 2,302,188 to 2,303,447 _11055 OLJFJH_11060: OLJFJH_11060 - oxidoreductase, at 2,303,447 to 2,303,899 _11060 OLJFJH_11065: OLJFJH_11065 - GNAT family N-acetyltransferase, at 2,303,899 to 2,304,336 _11065 OLJFJH_11070: OLJFJH_11070 - response regulator, at 2,304,346 to 2,305,125 _11070 Position (kb) 2303 2304 2305Strain fitness (log2 ratio) -1 0 1at 2302.989 kb on + strand, within OLJFJH_11055at 2303.054 kb on + strand, within OLJFJH_11055at 2303.435 kb on - strandat 2303.637 kb on + strand, within OLJFJH_11060at 2303.642 kb on - strand, within OLJFJH_11060at 2303.642 kb on - strand, within OLJFJH_11060at 2304.140 kb on - strand, within OLJFJH_11065at 2304.233 kb on + strand, within OLJFJH_11065at 2304.234 kb on - strand, within OLJFJH_11065at 2304.569 kb on - strand, within OLJFJH_11070at 2304.790 kb on - strand, within OLJFJH_11070at 2304.875 kb on - strand, within OLJFJH_11070at 2305.195 kb on - strandat 2305.328 kb on + strandat 2305.328 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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2,302,989 + OLJFJH_11055 0.64 +0.5
2,303,054 + OLJFJH_11055 0.69 -0.7
2,303,435 - -1.1
2,303,637 + OLJFJH_11060 0.42 -0.0
2,303,642 - OLJFJH_11060 0.43 -0.1
2,303,642 - OLJFJH_11060 0.43 -0.1
2,304,140 - OLJFJH_11065 0.55 -0.6
2,304,233 + OLJFJH_11065 0.76 +0.1
2,304,234 - OLJFJH_11065 0.76 -0.5
2,304,569 - OLJFJH_11070 0.29 -0.1
2,304,790 - OLJFJH_11070 0.57 +0.1
2,304,875 - OLJFJH_11070 0.68 -0.3
2,305,195 - +0.1
2,305,328 + +0.3
2,305,328 + +0.1

Or see this region's nucleotide sequence