Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_09420 and OLJFJH_09425 overlap by 11 nucleotides OLJFJH_09425 and OLJFJH_09430 overlap by 1 nucleotides OLJFJH_09430 and OLJFJH_09435 are separated by 47 nucleotides OLJFJH_09435 and OLJFJH_09440 are separated by 2 nucleotides
OLJFJH_09420: OLJFJH_09420 - type III secretion system protein, at 1,949,037 to 1,949,591
_09420
OLJFJH_09425: OLJFJH_09425 - type III secretion inner membrane ring lipoprotein SctJ, at 1,949,581 to 1,950,348
_09425
OLJFJH_09430: OLJFJH_09430 - type III secretion system inner rod subunit SctI, at 1,950,348 to 1,950,671
_09430
OLJFJH_09435: OLJFJH_09435 - type III secretion system needle complex protein, at 1,950,719 to 1,950,988
_09435
OLJFJH_09440: OLJFJH_09440 - PrgH/EprH family type III secretion apparatus protein, at 1,950,991 to 1,952,256
_09440
Position (kb) 1950
1951 Strain fitness (log2 ratio) -1
0
1 at 1949.554 kb on + strand at 1949.568 kb on + strand at 1949.887 kb on - strand, within OLJFJH_09425 at 1949.956 kb on + strand, within OLJFJH_09425 at 1949.956 kb on + strand, within OLJFJH_09425 at 1950.026 kb on - strand, within OLJFJH_09425 at 1950.244 kb on - strand, within OLJFJH_09425 at 1950.510 kb on - strand, within OLJFJH_09430 at 1951.063 kb on + strand at 1951.171 kb on - strand, within OLJFJH_09440 at 1951.204 kb on + strand, within OLJFJH_09440 at 1951.245 kb on + strand, within OLJFJH_09440 at 1951.387 kb on + strand, within OLJFJH_09440 at 1951.580 kb on + strand, within OLJFJH_09440 at 1951.580 kb on + strand, within OLJFJH_09440 at 1951.584 kb on + strand, within OLJFJH_09440 at 1951.585 kb on - strand, within OLJFJH_09440 at 1951.585 kb on - strand, within OLJFJH_09440 at 1951.613 kb on + strand, within OLJFJH_09440 at 1951.613 kb on + strand, within OLJFJH_09440 at 1951.614 kb on - strand, within OLJFJH_09440 at 1951.614 kb on - strand, within OLJFJH_09440 at 1951.614 kb on - strand, within OLJFJH_09440
Per-strain Table
Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1) remove 1,949,554 + +1.4 1,949,568 + -0.4 1,949,887 - OLJFJH_09425 0.40 -0.0 1,949,956 + OLJFJH_09425 0.49 -0.6 1,949,956 + OLJFJH_09425 0.49 +0.1 1,950,026 - OLJFJH_09425 0.58 -0.1 1,950,244 - OLJFJH_09425 0.86 +0.6 1,950,510 - OLJFJH_09430 0.50 -0.4 1,951,063 + -0.4 1,951,171 - OLJFJH_09440 0.14 +0.6 1,951,204 + OLJFJH_09440 0.17 +0.8 1,951,245 + OLJFJH_09440 0.20 -0.5 1,951,387 + OLJFJH_09440 0.31 -0.9 1,951,580 + OLJFJH_09440 0.47 +0.1 1,951,580 + OLJFJH_09440 0.47 -0.1 1,951,584 + OLJFJH_09440 0.47 +0.4 1,951,585 - OLJFJH_09440 0.47 -0.1 1,951,585 - OLJFJH_09440 0.47 +0.5 1,951,613 + OLJFJH_09440 0.49 -0.1 1,951,613 + OLJFJH_09440 0.49 +0.1 1,951,614 - OLJFJH_09440 0.49 -1.6 1,951,614 - OLJFJH_09440 0.49 +0.9 1,951,614 - OLJFJH_09440 0.49 -0.2
Or see this region's nucleotide sequence