Strain Fitness in Erwinia amylovora T8 around OLJFJH_09375

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09365 and OLJFJH_09370 overlap by 7 nucleotidesOLJFJH_09370 and OLJFJH_09375 are separated by 149 nucleotidesOLJFJH_09375 and OLJFJH_09380 are separated by 50 nucleotides OLJFJH_09365: OLJFJH_09365 - 5'/3'-nucleotidase SurE, at 1,938,738 to 1,939,499 _09365 OLJFJH_09370: OLJFJH_09370 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 1,939,493 to 1,940,119 _09370 OLJFJH_09375: OLJFJH_09375 - murein hydrolase activator NlpD, at 1,940,269 to 1,941,402 _09375 OLJFJH_09380: OLJFJH_09380 - RNA polymerase sigma factor RpoS, at 1,941,453 to 1,942,445 _09380 Position (kb) 1940 1941 1942Strain fitness (log2 ratio) -1 0 1 2 3at 1939.319 kb on + strand, within OLJFJH_09365at 1939.319 kb on + strand, within OLJFJH_09365at 1939.319 kb on + strand, within OLJFJH_09365at 1939.319 kb on + strand, within OLJFJH_09365at 1939.319 kb on + strand, within OLJFJH_09365at 1939.327 kb on - strand, within OLJFJH_09365at 1939.398 kb on + strand, within OLJFJH_09365at 1939.399 kb on - strand, within OLJFJH_09365at 1939.430 kb on + strandat 1939.509 kb on + strandat 1939.676 kb on + strand, within OLJFJH_09370at 1939.676 kb on + strand, within OLJFJH_09370at 1939.677 kb on - strand, within OLJFJH_09370at 1939.677 kb on - strand, within OLJFJH_09370at 1939.677 kb on - strand, within OLJFJH_09370at 1939.861 kb on + strand, within OLJFJH_09370at 1939.861 kb on + strand, within OLJFJH_09370at 1939.861 kb on + strand, within OLJFJH_09370at 1939.929 kb on + strand, within OLJFJH_09370at 1939.930 kb on - strand, within OLJFJH_09370at 1939.954 kb on - strand, within OLJFJH_09370at 1940.035 kb on + strand, within OLJFJH_09370at 1940.059 kb on + strandat 1940.141 kb on + strandat 1940.179 kb on + strandat 1940.179 kb on + strandat 1940.180 kb on - strandat 1940.182 kb on + strandat 1940.217 kb on - strandat 1940.229 kb on + strandat 1940.229 kb on + strandat 1940.229 kb on + strandat 1940.230 kb on - strandat 1940.230 kb on - strandat 1940.233 kb on + strandat 1940.234 kb on - strandat 1940.235 kb on + strandat 1940.298 kb on + strandat 1940.356 kb on - strandat 1940.367 kb on + strandat 1940.562 kb on + strand, within OLJFJH_09375at 1940.563 kb on - strand, within OLJFJH_09375at 1940.590 kb on + strand, within OLJFJH_09375at 1940.590 kb on + strand, within OLJFJH_09375at 1940.599 kb on - strand, within OLJFJH_09375at 1940.599 kb on - strand, within OLJFJH_09375at 1940.599 kb on - strand, within OLJFJH_09375at 1940.622 kb on + strand, within OLJFJH_09375at 1940.627 kb on - strand, within OLJFJH_09375at 1940.641 kb on + strand, within OLJFJH_09375at 1940.642 kb on - strand, within OLJFJH_09375at 1940.642 kb on - strand, within OLJFJH_09375at 1940.643 kb on + strand, within OLJFJH_09375at 1940.644 kb on - strand, within OLJFJH_09375at 1940.672 kb on - strand, within OLJFJH_09375at 1940.672 kb on - strand, within OLJFJH_09375at 1940.672 kb on - strand, within OLJFJH_09375at 1940.718 kb on + strand, within OLJFJH_09375at 1940.718 kb on + strand, within OLJFJH_09375at 1940.718 kb on + strand, within OLJFJH_09375at 1940.719 kb on - strand, within OLJFJH_09375at 1940.719 kb on - strand, within OLJFJH_09375at 1940.719 kb on - strand, within OLJFJH_09375at 1940.721 kb on + strand, within OLJFJH_09375at 1940.722 kb on - strand, within OLJFJH_09375at 1940.897 kb on + strand, within OLJFJH_09375at 1940.901 kb on + strand, within OLJFJH_09375at 1940.902 kb on - strand, within OLJFJH_09375at 1940.906 kb on - strand, within OLJFJH_09375at 1940.923 kb on - strand, within OLJFJH_09375at 1941.010 kb on - strand, within OLJFJH_09375at 1941.164 kb on + strand, within OLJFJH_09375at 1941.216 kb on + strand, within OLJFJH_09375at 1941.226 kb on + strand, within OLJFJH_09375at 1941.227 kb on - strand, within OLJFJH_09375at 1941.338 kb on + strandat 1941.338 kb on + strandat 1941.385 kb on + strandat 1941.452 kb on + strandat 1941.453 kb on - strandat 1941.484 kb on + strandat 1941.484 kb on + strandat 1941.571 kb on + strand, within OLJFJH_09380at 1941.748 kb on + strand, within OLJFJH_09380at 1941.748 kb on + strand, within OLJFJH_09380at 1941.749 kb on - strand, within OLJFJH_09380at 1941.749 kb on - strand, within OLJFJH_09380at 1942.013 kb on + strand, within OLJFJH_09380at 1942.013 kb on + strand, within OLJFJH_09380at 1942.014 kb on - strand, within OLJFJH_09380at 1942.014 kb on - strand, within OLJFJH_09380at 1942.062 kb on - strand, within OLJFJH_09380at 1942.110 kb on - strand, within OLJFJH_09380at 1942.110 kb on - strand, within OLJFJH_09380at 1942.122 kb on - strand, within OLJFJH_09380at 1942.197 kb on - strand, within OLJFJH_09380at 1942.214 kb on + strand, within OLJFJH_09380at 1942.214 kb on + strand, within OLJFJH_09380at 1942.295 kb on - strand, within OLJFJH_09380at 1942.400 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,939,319 + OLJFJH_09365 0.76 -0.1
1,939,319 + OLJFJH_09365 0.76 -0.2
1,939,319 + OLJFJH_09365 0.76 -0.3
1,939,319 + OLJFJH_09365 0.76 +1.1
1,939,319 + OLJFJH_09365 0.76 +0.1
1,939,327 - OLJFJH_09365 0.77 +0.1
1,939,398 + OLJFJH_09365 0.87 -0.2
1,939,399 - OLJFJH_09365 0.87 -0.9
1,939,430 + +0.7
1,939,509 + +0.6
1,939,676 + OLJFJH_09370 0.29 -0.2
1,939,676 + OLJFJH_09370 0.29 -0.8
1,939,677 - OLJFJH_09370 0.29 -0.2
1,939,677 - OLJFJH_09370 0.29 -0.1
1,939,677 - OLJFJH_09370 0.29 -0.3
1,939,861 + OLJFJH_09370 0.59 -0.6
1,939,861 + OLJFJH_09370 0.59 +0.0
1,939,861 + OLJFJH_09370 0.59 -0.3
1,939,929 + OLJFJH_09370 0.70 -1.4
1,939,930 - OLJFJH_09370 0.70 -0.7
1,939,954 - OLJFJH_09370 0.74 -0.2
1,940,035 + OLJFJH_09370 0.86 -0.2
1,940,059 + -0.6
1,940,141 + +0.4
1,940,179 + +0.1
1,940,179 + +0.2
1,940,180 - -0.2
1,940,182 + +0.3
1,940,217 - +0.0
1,940,229 + +0.3
1,940,229 + -0.3
1,940,229 + -0.4
1,940,230 - -1.0
1,940,230 - +0.2
1,940,233 + +0.4
1,940,234 - -1.3
1,940,235 + +0.2
1,940,298 + -0.6
1,940,356 - +0.9
1,940,367 + -1.1
1,940,562 + OLJFJH_09375 0.26 +1.9
1,940,563 - OLJFJH_09375 0.26 -0.6
1,940,590 + OLJFJH_09375 0.28 -0.2
1,940,590 + OLJFJH_09375 0.28 -0.1
1,940,599 - OLJFJH_09375 0.29 +0.9
1,940,599 - OLJFJH_09375 0.29 +0.2
1,940,599 - OLJFJH_09375 0.29 -0.6
1,940,622 + OLJFJH_09375 0.31 -0.5
1,940,627 - OLJFJH_09375 0.32 +0.4
1,940,641 + OLJFJH_09375 0.33 -0.4
1,940,642 - OLJFJH_09375 0.33 -1.2
1,940,642 - OLJFJH_09375 0.33 -0.6
1,940,643 + OLJFJH_09375 0.33 +0.0
1,940,644 - OLJFJH_09375 0.33 +0.9
1,940,672 - OLJFJH_09375 0.36 -1.4
1,940,672 - OLJFJH_09375 0.36 +0.3
1,940,672 - OLJFJH_09375 0.36 -0.3
1,940,718 + OLJFJH_09375 0.40 -1.1
1,940,718 + OLJFJH_09375 0.40 +0.5
1,940,718 + OLJFJH_09375 0.40 -0.6
1,940,719 - OLJFJH_09375 0.40 -0.8
1,940,719 - OLJFJH_09375 0.40 -0.1
1,940,719 - OLJFJH_09375 0.40 +0.2
1,940,721 + OLJFJH_09375 0.40 +0.3
1,940,722 - OLJFJH_09375 0.40 +1.9
1,940,897 + OLJFJH_09375 0.55 -0.1
1,940,901 + OLJFJH_09375 0.56 +0.5
1,940,902 - OLJFJH_09375 0.56 +0.0
1,940,906 - OLJFJH_09375 0.56 -0.1
1,940,923 - OLJFJH_09375 0.58 -1.1
1,941,010 - OLJFJH_09375 0.65 -0.5
1,941,164 + OLJFJH_09375 0.79 -0.1
1,941,216 + OLJFJH_09375 0.84 -0.3
1,941,226 + OLJFJH_09375 0.84 -0.1
1,941,227 - OLJFJH_09375 0.84 -0.1
1,941,338 + +0.4
1,941,338 + +0.5
1,941,385 + -0.3
1,941,452 + -0.0
1,941,453 - +0.2
1,941,484 + +0.3
1,941,484 + +1.7
1,941,571 + OLJFJH_09380 0.12 -0.4
1,941,748 + OLJFJH_09380 0.30 -0.1
1,941,748 + OLJFJH_09380 0.30 +0.1
1,941,749 - OLJFJH_09380 0.30 -0.2
1,941,749 - OLJFJH_09380 0.30 +0.2
1,942,013 + OLJFJH_09380 0.56 +0.1
1,942,013 + OLJFJH_09380 0.56 +2.9
1,942,014 - OLJFJH_09380 0.56 +0.4
1,942,014 - OLJFJH_09380 0.56 -0.1
1,942,062 - OLJFJH_09380 0.61 +0.2
1,942,110 - OLJFJH_09380 0.66 -0.1
1,942,110 - OLJFJH_09380 0.66 +1.2
1,942,122 - OLJFJH_09380 0.67 -0.0
1,942,197 - OLJFJH_09380 0.75 -0.3
1,942,214 + OLJFJH_09380 0.77 +0.2
1,942,214 + OLJFJH_09380 0.77 +0.5
1,942,295 - OLJFJH_09380 0.85 +0.1
1,942,400 - -0.3

Or see this region's nucleotide sequence