Strain Fitness in Erwinia amylovora T8 around OLJFJH_08835

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08830 and OLJFJH_08835 are separated by 387 nucleotidesOLJFJH_08835 and OLJFJH_08840 are separated by 44 nucleotidesOLJFJH_08840 and OLJFJH_08845 are separated by 5 nucleotides OLJFJH_08830: OLJFJH_08830 - type III effector, at 1,808,067 to 1,809,746 _08830 OLJFJH_08835: OLJFJH_08835 - site-specific tyrosine recombinase XerD, at 1,810,134 to 1,811,027 _08835 OLJFJH_08840: OLJFJH_08840 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 1,811,072 to 1,811,776 _08840 OLJFJH_08845: OLJFJH_08845 - single-stranded-DNA-specific exonuclease RecJ, at 1,811,782 to 1,813,500 _08845 Position (kb) 1810 1811 1812Strain fitness (log2 ratio) -2 -1 0 1at 1809.151 kb on - strand, within OLJFJH_08830at 1809.151 kb on - strand, within OLJFJH_08830at 1809.182 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.192 kb on - strand, within OLJFJH_08830at 1809.192 kb on - strand, within OLJFJH_08830at 1809.192 kb on - strand, within OLJFJH_08830at 1809.192 kb on - strand, within OLJFJH_08830at 1809.262 kb on + strand, within OLJFJH_08830at 1809.263 kb on - strand, within OLJFJH_08830at 1809.275 kb on + strand, within OLJFJH_08830at 1809.276 kb on - strand, within OLJFJH_08830at 1809.321 kb on - strand, within OLJFJH_08830at 1809.707 kb on - strandat 1809.738 kb on + strandat 1809.739 kb on - strandat 1809.741 kb on - strandat 1809.749 kb on + strandat 1809.749 kb on + strandat 1809.792 kb on + strandat 1809.792 kb on + strandat 1809.793 kb on - strandat 1809.793 kb on - strandat 1809.922 kb on - strandat 1809.959 kb on + strandat 1809.988 kb on - strandat 1810.014 kb on - strandat 1810.016 kb on + strandat 1810.016 kb on + strandat 1810.017 kb on - strandat 1810.023 kb on - strandat 1810.049 kb on + strandat 1810.050 kb on - strandat 1810.058 kb on - strandat 1810.064 kb on - strandat 1810.066 kb on + strandat 1810.068 kb on + strandat 1810.286 kb on - strand, within OLJFJH_08835at 1810.331 kb on + strand, within OLJFJH_08835at 1810.483 kb on + strand, within OLJFJH_08835at 1810.706 kb on + strand, within OLJFJH_08835at 1810.707 kb on - strand, within OLJFJH_08835at 1810.818 kb on + strand, within OLJFJH_08835at 1810.930 kb on + strand, within OLJFJH_08835at 1810.930 kb on + strand, within OLJFJH_08835at 1810.931 kb on - strand, within OLJFJH_08835at 1810.931 kb on - strand, within OLJFJH_08835at 1810.934 kb on - strand, within OLJFJH_08835at 1810.965 kb on + strandat 1810.965 kb on + strandat 1810.965 kb on + strandat 1810.966 kb on - strandat 1810.967 kb on + strandat 1810.967 kb on + strandat 1811.047 kb on + strandat 1811.047 kb on + strandat 1811.047 kb on + strandat 1811.047 kb on + strandat 1811.047 kb on + strandat 1811.047 kb on + strandat 1811.048 kb on - strandat 1811.048 kb on - strandat 1811.048 kb on - strandat 1811.049 kb on + strandat 1811.049 kb on + strandat 1811.067 kb on + strandat 1811.067 kb on + strandat 1811.067 kb on + strandat 1811.067 kb on + strandat 1811.068 kb on - strandat 1811.068 kb on - strandat 1811.068 kb on - strandat 1811.068 kb on - strandat 1811.068 kb on - strandat 1811.068 kb on - strandat 1811.084 kb on + strandat 1811.092 kb on - strandat 1811.101 kb on - strandat 1811.101 kb on - strandat 1811.104 kb on - strandat 1811.104 kb on - strandat 1811.146 kb on + strand, within OLJFJH_08840at 1811.147 kb on - strand, within OLJFJH_08840at 1811.175 kb on + strand, within OLJFJH_08840at 1811.175 kb on + strand, within OLJFJH_08840at 1811.176 kb on - strand, within OLJFJH_08840at 1811.242 kb on - strand, within OLJFJH_08840at 1811.242 kb on - strand, within OLJFJH_08840at 1811.246 kb on + strand, within OLJFJH_08840at 1811.246 kb on + strand, within OLJFJH_08840at 1811.246 kb on + strand, within OLJFJH_08840at 1811.247 kb on - strand, within OLJFJH_08840at 1811.247 kb on - strand, within OLJFJH_08840at 1811.289 kb on - strand, within OLJFJH_08840at 1811.289 kb on - strand, within OLJFJH_08840at 1811.375 kb on + strand, within OLJFJH_08840at 1811.396 kb on + strand, within OLJFJH_08840at 1811.397 kb on - strand, within OLJFJH_08840at 1811.397 kb on - strand, within OLJFJH_08840at 1811.420 kb on - strand, within OLJFJH_08840at 1811.465 kb on + strand, within OLJFJH_08840at 1811.645 kb on + strand, within OLJFJH_08840at 1811.646 kb on - strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.686 kb on + strand, within OLJFJH_08840at 1811.790 kb on + strandat 1812.003 kb on + strand, within OLJFJH_08845at 1812.003 kb on + strand, within OLJFJH_08845at 1812.003 kb on + strand, within OLJFJH_08845at 1812.004 kb on - strand, within OLJFJH_08845

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,809,151 - OLJFJH_08830 0.65 -0.2
1,809,151 - OLJFJH_08830 0.65 +0.3
1,809,182 + OLJFJH_08830 0.66 -1.1
1,809,191 + OLJFJH_08830 0.67 +0.2
1,809,191 + OLJFJH_08830 0.67 -0.1
1,809,191 + OLJFJH_08830 0.67 -1.3
1,809,191 + OLJFJH_08830 0.67 +0.2
1,809,191 + OLJFJH_08830 0.67 +0.1
1,809,191 + OLJFJH_08830 0.67 -0.1
1,809,191 + OLJFJH_08830 0.67 +0.5
1,809,191 + OLJFJH_08830 0.67 +0.0
1,809,192 - OLJFJH_08830 0.67 +0.3
1,809,192 - OLJFJH_08830 0.67 +0.1
1,809,192 - OLJFJH_08830 0.67 +0.3
1,809,192 - OLJFJH_08830 0.67 -0.2
1,809,262 + OLJFJH_08830 0.71 +0.5
1,809,263 - OLJFJH_08830 0.71 -0.3
1,809,275 + OLJFJH_08830 0.72 -0.3
1,809,276 - OLJFJH_08830 0.72 +0.0
1,809,321 - OLJFJH_08830 0.75 +0.5
1,809,707 - -0.3
1,809,738 + -0.4
1,809,739 - -0.1
1,809,741 - +0.1
1,809,749 + +0.1
1,809,749 + +0.2
1,809,792 + +0.1
1,809,792 + -0.1
1,809,793 - +0.2
1,809,793 - +0.8
1,809,922 - +0.6
1,809,959 + +0.4
1,809,988 - -0.5
1,810,014 - -0.0
1,810,016 + -0.1
1,810,016 + -0.4
1,810,017 - +1.5
1,810,023 - +0.1
1,810,049 + -0.3
1,810,050 - +0.3
1,810,058 - -0.1
1,810,064 - +0.9
1,810,066 + -0.4
1,810,068 + +0.2
1,810,286 - OLJFJH_08835 0.17 -0.5
1,810,331 + OLJFJH_08835 0.22 -1.6
1,810,483 + OLJFJH_08835 0.39 -1.7
1,810,706 + OLJFJH_08835 0.64 +0.1
1,810,707 - OLJFJH_08835 0.64 -0.1
1,810,818 + OLJFJH_08835 0.77 -0.5
1,810,930 + OLJFJH_08835 0.89 -2.5
1,810,930 + OLJFJH_08835 0.89 -0.3
1,810,931 - OLJFJH_08835 0.89 -0.6
1,810,931 - OLJFJH_08835 0.89 +0.4
1,810,934 - OLJFJH_08835 0.89 +0.9
1,810,965 + -0.9
1,810,965 + -0.1
1,810,965 + -0.2
1,810,966 - -1.1
1,810,967 + -0.4
1,810,967 + +0.7
1,811,047 + -0.3
1,811,047 + -0.1
1,811,047 + -0.1
1,811,047 + -0.9
1,811,047 + +0.2
1,811,047 + -0.4
1,811,048 - -0.1
1,811,048 - +0.2
1,811,048 - -0.5
1,811,049 + -0.1
1,811,049 + +0.0
1,811,067 + -0.2
1,811,067 + +0.0
1,811,067 + -0.2
1,811,067 + -0.0
1,811,068 - -0.3
1,811,068 - +0.4
1,811,068 - -0.2
1,811,068 - +0.3
1,811,068 - +0.7
1,811,068 - -0.3
1,811,084 + -0.1
1,811,092 - +0.6
1,811,101 - -0.1
1,811,101 - +0.6
1,811,104 - +0.4
1,811,104 - +0.2
1,811,146 + OLJFJH_08840 0.10 -0.1
1,811,147 - OLJFJH_08840 0.11 +0.6
1,811,175 + OLJFJH_08840 0.15 -0.2
1,811,175 + OLJFJH_08840 0.15 -0.2
1,811,176 - OLJFJH_08840 0.15 -0.1
1,811,242 - OLJFJH_08840 0.24 +0.7
1,811,242 - OLJFJH_08840 0.24 +0.1
1,811,246 + OLJFJH_08840 0.25 -0.4
1,811,246 + OLJFJH_08840 0.25 -0.5
1,811,246 + OLJFJH_08840 0.25 -1.1
1,811,247 - OLJFJH_08840 0.25 -0.1
1,811,247 - OLJFJH_08840 0.25 -0.5
1,811,289 - OLJFJH_08840 0.31 +0.6
1,811,289 - OLJFJH_08840 0.31 -0.5
1,811,375 + OLJFJH_08840 0.43 +0.5
1,811,396 + OLJFJH_08840 0.46 -0.3
1,811,397 - OLJFJH_08840 0.46 -1.4
1,811,397 - OLJFJH_08840 0.46 -0.5
1,811,420 - OLJFJH_08840 0.49 -0.1
1,811,465 + OLJFJH_08840 0.56 -0.8
1,811,645 + OLJFJH_08840 0.81 +0.3
1,811,646 - OLJFJH_08840 0.81 +0.3
1,811,647 + OLJFJH_08840 0.82 +0.6
1,811,647 + OLJFJH_08840 0.82 -1.3
1,811,647 + OLJFJH_08840 0.82 +0.3
1,811,647 + OLJFJH_08840 0.82 +0.3
1,811,647 + OLJFJH_08840 0.82 +0.1
1,811,647 + OLJFJH_08840 0.82 -0.3
1,811,648 - OLJFJH_08840 0.82 -0.1
1,811,648 - OLJFJH_08840 0.82 -0.1
1,811,648 - OLJFJH_08840 0.82 +0.0
1,811,648 - OLJFJH_08840 0.82 -0.6
1,811,648 - OLJFJH_08840 0.82 -0.5
1,811,648 - OLJFJH_08840 0.82 +0.9
1,811,648 - OLJFJH_08840 0.82 -0.0
1,811,686 + OLJFJH_08840 0.87 +0.0
1,811,790 + +0.0
1,812,003 + OLJFJH_08845 0.13 -0.3
1,812,003 + OLJFJH_08845 0.13 +0.6
1,812,003 + OLJFJH_08845 0.13 -0.3
1,812,004 - OLJFJH_08845 0.13 -1.4

Or see this region's nucleotide sequence