Strain Fitness in Erwinia amylovora T8 around OLJFJH_08570

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08560 and OLJFJH_08565 overlap by 4 nucleotidesOLJFJH_08565 and OLJFJH_08570 are separated by 89 nucleotidesOLJFJH_08570 and OLJFJH_08575 are separated by 367 nucleotides OLJFJH_08560: OLJFJH_08560 - Holliday junction resolvase RuvX, at 1,754,289 to 1,754,714 _08560 OLJFJH_08565: OLJFJH_08565 - YqgE/AlgH family protein, at 1,754,711 to 1,755,274 _08565 OLJFJH_08570: OLJFJH_08570 - glutathione synthase, at 1,755,364 to 1,756,308 _08570 OLJFJH_08575: OLJFJH_08575 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 1,756,676 to 1,757,407 _08575 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -1 0 1at 1754.790 kb on - strand, within OLJFJH_08565at 1754.996 kb on - strand, within OLJFJH_08565at 1755.078 kb on - strand, within OLJFJH_08565at 1755.078 kb on - strand, within OLJFJH_08565at 1755.200 kb on - strand, within OLJFJH_08565at 1755.200 kb on - strand, within OLJFJH_08565at 1755.202 kb on - strand, within OLJFJH_08565at 1755.202 kb on - strand, within OLJFJH_08565at 1755.279 kb on - strandat 1755.289 kb on - strandat 1755.394 kb on + strandat 1755.463 kb on - strand, within OLJFJH_08570at 1755.831 kb on + strand, within OLJFJH_08570at 1755.832 kb on - strand, within OLJFJH_08570at 1755.832 kb on - strand, within OLJFJH_08570at 1755.832 kb on - strand, within OLJFJH_08570at 1755.835 kb on + strand, within OLJFJH_08570at 1755.835 kb on + strand, within OLJFJH_08570at 1755.835 kb on + strand, within OLJFJH_08570at 1755.836 kb on - strand, within OLJFJH_08570at 1755.836 kb on - strand, within OLJFJH_08570at 1755.836 kb on - strand, within OLJFJH_08570at 1755.847 kb on - strand, within OLJFJH_08570at 1755.974 kb on - strand, within OLJFJH_08570at 1756.011 kb on - strand, within OLJFJH_08570at 1756.011 kb on - strand, within OLJFJH_08570at 1756.011 kb on - strand, within OLJFJH_08570at 1756.020 kb on - strand, within OLJFJH_08570at 1756.139 kb on - strand, within OLJFJH_08570at 1756.329 kb on - strandat 1756.558 kb on + strandat 1756.558 kb on + strandat 1756.566 kb on - strandat 1756.570 kb on + strandat 1756.570 kb on + strandat 1756.600 kb on + strandat 1756.601 kb on - strandat 1756.612 kb on + strandat 1756.613 kb on - strandat 1756.613 kb on - strandat 1756.662 kb on + strandat 1756.662 kb on + strandat 1756.663 kb on - strandat 1756.765 kb on + strand, within OLJFJH_08575at 1756.766 kb on - strand, within OLJFJH_08575at 1756.772 kb on - strand, within OLJFJH_08575at 1757.096 kb on + strand, within OLJFJH_08575at 1757.126 kb on - strand, within OLJFJH_08575at 1757.126 kb on - strand, within OLJFJH_08575

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,754,790 - OLJFJH_08565 0.14 +0.2
1,754,996 - OLJFJH_08565 0.51 +0.9
1,755,078 - OLJFJH_08565 0.65 +0.7
1,755,078 - OLJFJH_08565 0.65 +0.2
1,755,200 - OLJFJH_08565 0.87 -0.0
1,755,200 - OLJFJH_08565 0.87 -0.8
1,755,202 - OLJFJH_08565 0.87 -0.2
1,755,202 - OLJFJH_08565 0.87 -0.7
1,755,279 - +0.0
1,755,289 - -0.1
1,755,394 + +0.3
1,755,463 - OLJFJH_08570 0.10 -1.5
1,755,831 + OLJFJH_08570 0.49 -0.1
1,755,832 - OLJFJH_08570 0.50 -1.3
1,755,832 - OLJFJH_08570 0.50 +0.9
1,755,832 - OLJFJH_08570 0.50 -0.1
1,755,835 + OLJFJH_08570 0.50 +0.3
1,755,835 + OLJFJH_08570 0.50 +0.9
1,755,835 + OLJFJH_08570 0.50 -0.7
1,755,836 - OLJFJH_08570 0.50 -0.7
1,755,836 - OLJFJH_08570 0.50 +0.1
1,755,836 - OLJFJH_08570 0.50 -0.8
1,755,847 - OLJFJH_08570 0.51 +0.9
1,755,974 - OLJFJH_08570 0.65 -0.6
1,756,011 - OLJFJH_08570 0.68 +0.3
1,756,011 - OLJFJH_08570 0.68 -0.9
1,756,011 - OLJFJH_08570 0.68 -0.3
1,756,020 - OLJFJH_08570 0.69 -0.7
1,756,139 - OLJFJH_08570 0.82 -0.2
1,756,329 - -0.2
1,756,558 + -0.5
1,756,558 + -0.9
1,756,566 - +0.6
1,756,570 + +0.2
1,756,570 + -0.8
1,756,600 + -0.1
1,756,601 - -0.3
1,756,612 + +0.6
1,756,613 - -0.3
1,756,613 - +0.2
1,756,662 + +0.4
1,756,662 + +0.2
1,756,663 - -0.5
1,756,765 + OLJFJH_08575 0.12 -1.0
1,756,766 - OLJFJH_08575 0.12 -0.2
1,756,772 - OLJFJH_08575 0.13 -0.5
1,757,096 + OLJFJH_08575 0.57 -0.5
1,757,126 - OLJFJH_08575 0.61 +0.6
1,757,126 - OLJFJH_08575 0.61 -0.0

Or see this region's nucleotide sequence