Strain Fitness in Erwinia amylovora T8 around OLJFJH_08445

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08435 and OLJFJH_08440 are separated by 1 nucleotidesOLJFJH_08440 and OLJFJH_08445 overlap by 26 nucleotidesOLJFJH_08445 and OLJFJH_08450 are separated by 28 nucleotidesOLJFJH_08450 and OLJFJH_08455 are separated by 33 nucleotidesOLJFJH_08455 and OLJFJH_08460 are separated by 6 nucleotides OLJFJH_08435: OLJFJH_08435 - integrating conjugative element protein, at 1,733,769 to 1,735,172 _08435 OLJFJH_08440: OLJFJH_08440 - hypothetical protein, at 1,735,174 to 1,735,707 _08440 OLJFJH_08445: OLJFJH_08445 - hypothetical protein, at 1,735,682 to 1,736,230 _08445 OLJFJH_08450: OLJFJH_08450 - TraI-2-C domain-containing protein, at 1,736,259 to 1,736,612 _08450 OLJFJH_08455: OLJFJH_08455 - Integrase, at 1,736,646 to 1,737,122 _08455 OLJFJH_08460: OLJFJH_08460 - Site-specific recombinase XerC, at 1,737,129 to 1,737,605 _08460 Position (kb) 1735 1736 1737Strain fitness (log2 ratio) -1 0 1at 1734.902 kb on + strand, within OLJFJH_08435at 1735.360 kb on + strand, within OLJFJH_08440at 1735.360 kb on + strand, within OLJFJH_08440at 1735.471 kb on - strand, within OLJFJH_08440at 1735.486 kb on + strand, within OLJFJH_08440at 1735.487 kb on - strand, within OLJFJH_08440at 1735.640 kb on + strand, within OLJFJH_08440at 1735.640 kb on + strand, within OLJFJH_08440at 1735.640 kb on + strand, within OLJFJH_08440at 1735.640 kb on + strand, within OLJFJH_08440at 1735.640 kb on + strand, within OLJFJH_08440at 1735.640 kb on + strand, within OLJFJH_08440at 1735.640 kb on + strand, within OLJFJH_08440at 1735.640 kb on + strand, within OLJFJH_08440at 1735.640 kb on + strand, within OLJFJH_08440at 1735.640 kb on + strand, within OLJFJH_08440at 1735.640 kb on + strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.641 kb on - strand, within OLJFJH_08440at 1735.833 kb on + strand, within OLJFJH_08445at 1735.834 kb on - strand, within OLJFJH_08445at 1735.946 kb on - strand, within OLJFJH_08445at 1735.946 kb on - strand, within OLJFJH_08445at 1736.376 kb on + strand, within OLJFJH_08450at 1736.377 kb on - strand, within OLJFJH_08450at 1736.486 kb on + strand, within OLJFJH_08450at 1736.490 kb on + strand, within OLJFJH_08450at 1736.535 kb on + strand, within OLJFJH_08450at 1736.589 kb on - strandat 1736.589 kb on - strandat 1736.590 kb on + strandat 1736.590 kb on + strandat 1736.591 kb on - strandat 1736.646 kb on - strandat 1736.728 kb on - strand, within OLJFJH_08455at 1736.741 kb on - strand, within OLJFJH_08455at 1736.744 kb on + strand, within OLJFJH_08455at 1736.745 kb on - strand, within OLJFJH_08455at 1736.807 kb on + strand, within OLJFJH_08455at 1736.807 kb on + strand, within OLJFJH_08455at 1736.808 kb on - strand, within OLJFJH_08455at 1736.864 kb on + strand, within OLJFJH_08455at 1736.864 kb on + strand, within OLJFJH_08455at 1736.865 kb on - strand, within OLJFJH_08455at 1736.892 kb on - strand, within OLJFJH_08455at 1736.915 kb on + strand, within OLJFJH_08455at 1736.954 kb on - strand, within OLJFJH_08455at 1737.152 kb on + strandat 1737.153 kb on - strandat 1737.154 kb on + strandat 1737.154 kb on + strandat 1737.154 kb on + strandat 1737.154 kb on + strandat 1737.154 kb on + strandat 1737.154 kb on + strandat 1737.154 kb on + strandat 1737.154 kb on + strandat 1737.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,734,902 + OLJFJH_08435 0.81 -0.3
1,735,360 + OLJFJH_08440 0.35 -0.3
1,735,360 + OLJFJH_08440 0.35 -0.0
1,735,471 - OLJFJH_08440 0.56 -0.3
1,735,486 + OLJFJH_08440 0.58 +0.6
1,735,487 - OLJFJH_08440 0.59 -0.3
1,735,640 + OLJFJH_08440 0.87 +0.3
1,735,640 + OLJFJH_08440 0.87 +0.1
1,735,640 + OLJFJH_08440 0.87 +0.5
1,735,640 + OLJFJH_08440 0.87 +0.1
1,735,640 + OLJFJH_08440 0.87 +0.0
1,735,640 + OLJFJH_08440 0.87 -0.2
1,735,640 + OLJFJH_08440 0.87 +0.1
1,735,640 + OLJFJH_08440 0.87 -0.4
1,735,640 + OLJFJH_08440 0.87 +0.3
1,735,640 + OLJFJH_08440 0.87 +0.4
1,735,640 + OLJFJH_08440 0.87 -0.2
1,735,641 - OLJFJH_08440 0.87 -0.1
1,735,641 - OLJFJH_08440 0.87 +0.2
1,735,641 - OLJFJH_08440 0.87 -0.1
1,735,641 - OLJFJH_08440 0.87 +0.2
1,735,641 - OLJFJH_08440 0.87 -0.1
1,735,641 - OLJFJH_08440 0.87 -0.5
1,735,641 - OLJFJH_08440 0.87 -0.2
1,735,641 - OLJFJH_08440 0.87 +0.2
1,735,641 - OLJFJH_08440 0.87 -0.1
1,735,641 - OLJFJH_08440 0.87 -0.1
1,735,641 - OLJFJH_08440 0.87 -0.2
1,735,641 - OLJFJH_08440 0.87 +0.3
1,735,641 - OLJFJH_08440 0.87 +0.1
1,735,833 + OLJFJH_08445 0.28 +0.1
1,735,834 - OLJFJH_08445 0.28 -1.0
1,735,946 - OLJFJH_08445 0.48 -0.2
1,735,946 - OLJFJH_08445 0.48 -0.4
1,736,376 + OLJFJH_08450 0.33 +0.9
1,736,377 - OLJFJH_08450 0.33 +0.1
1,736,486 + OLJFJH_08450 0.64 -0.1
1,736,490 + OLJFJH_08450 0.65 +0.8
1,736,535 + OLJFJH_08450 0.78 -0.1
1,736,589 - +0.3
1,736,589 - -0.0
1,736,590 + +0.2
1,736,590 + -0.4
1,736,591 - -0.4
1,736,646 - +0.1
1,736,728 - OLJFJH_08455 0.17 +0.4
1,736,741 - OLJFJH_08455 0.20 +0.0
1,736,744 + OLJFJH_08455 0.21 +0.4
1,736,745 - OLJFJH_08455 0.21 +0.3
1,736,807 + OLJFJH_08455 0.34 +0.6
1,736,807 + OLJFJH_08455 0.34 -0.2
1,736,808 - OLJFJH_08455 0.34 -0.3
1,736,864 + OLJFJH_08455 0.46 +0.1
1,736,864 + OLJFJH_08455 0.46 -1.3
1,736,865 - OLJFJH_08455 0.46 +0.0
1,736,892 - OLJFJH_08455 0.52 -0.6
1,736,915 + OLJFJH_08455 0.56 -0.1
1,736,954 - OLJFJH_08455 0.65 +0.0
1,737,152 + -0.4
1,737,153 - -0.3
1,737,154 + +0.5
1,737,154 + +1.1
1,737,154 + +0.3
1,737,154 + +0.4
1,737,154 + +0.5
1,737,154 + +0.2
1,737,154 + +0.6
1,737,154 + +0.0
1,737,155 - +0.2

Or see this region's nucleotide sequence