Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_08400 and OLJFJH_08405 are separated by 550 nucleotides OLJFJH_08405 and OLJFJH_08410 are separated by 201 nucleotides OLJFJH_08410 and OLJFJH_08415 are separated by 88 nucleotides
OLJFJH_08400: OLJFJH_08400 - hypothetical protein, at 1,727,843 to 1,728,160
_08400
OLJFJH_08405: OLJFJH_08405 - hypothetical protein, at 1,728,711 to 1,729,094
_08405
OLJFJH_08410: OLJFJH_08410 - hypothetical protein, at 1,729,296 to 1,729,472
_08410
OLJFJH_08415: OLJFJH_08415 - hypothetical protein, at 1,729,561 to 1,730,589
_08415
Position (kb) 1728
1729
1730 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1727.735 kb on + strand at 1727.736 kb on - strand at 1727.969 kb on - strand, within OLJFJH_08400 at 1727.970 kb on + strand, within OLJFJH_08400 at 1728.053 kb on + strand, within OLJFJH_08400 at 1728.158 kb on + strand at 1728.463 kb on + strand at 1728.617 kb on + strand at 1728.623 kb on + strand at 1728.624 kb on - strand at 1728.624 kb on - strand at 1728.625 kb on + strand at 1728.713 kb on - strand at 1728.754 kb on + strand, within OLJFJH_08405 at 1728.836 kb on + strand, within OLJFJH_08405 at 1728.857 kb on - strand, within OLJFJH_08405 at 1729.079 kb on + strand at 1729.126 kb on + strand at 1729.181 kb on + strand at 1729.260 kb on - strand at 1729.378 kb on + strand, within OLJFJH_08410 at 1729.379 kb on - strand, within OLJFJH_08410 at 1729.443 kb on + strand, within OLJFJH_08410 at 1729.468 kb on + strand at 1729.583 kb on + strand at 1729.692 kb on - strand, within OLJFJH_08415 at 1730.072 kb on + strand, within OLJFJH_08415 at 1730.077 kb on + strand, within OLJFJH_08415
Per-strain Table
Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1) remove 1,727,735 + +0.9 1,727,736 - +0.4 1,727,969 - OLJFJH_08400 0.40 -1.4 1,727,970 + OLJFJH_08400 0.40 +1.9 1,728,053 + OLJFJH_08400 0.66 +0.5 1,728,158 + -0.5 1,728,463 + +0.2 1,728,617 + -0.2 1,728,623 + +0.3 1,728,624 - -0.1 1,728,624 - -0.6 1,728,625 + -0.0 1,728,713 - +0.0 1,728,754 + OLJFJH_08405 0.11 -0.5 1,728,836 + OLJFJH_08405 0.33 -0.3 1,728,857 - OLJFJH_08405 0.38 -1.0 1,729,079 + +0.1 1,729,126 + -1.4 1,729,181 + -0.0 1,729,260 - -0.4 1,729,378 + OLJFJH_08410 0.46 -1.9 1,729,379 - OLJFJH_08410 0.47 -0.0 1,729,443 + OLJFJH_08410 0.83 -0.4 1,729,468 + -0.7 1,729,583 + +0.3 1,729,692 - OLJFJH_08415 0.13 -0.1 1,730,072 + OLJFJH_08415 0.50 -0.1 1,730,077 + OLJFJH_08415 0.50 +0.4
Or see this region's nucleotide sequence