Strain Fitness in Erwinia amylovora T8 around OLJFJH_07830

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_07820 and OLJFJH_07825 are separated by 244 nucleotidesOLJFJH_07825 and OLJFJH_07830 are separated by 5 nucleotidesOLJFJH_07830 and OLJFJH_07835 are separated by 52 nucleotides OLJFJH_07820: OLJFJH_07820 - cystathionine beta-lyase, at 1,616,780 to 1,617,973 _07820 OLJFJH_07825: OLJFJH_07825 - tol-pal system-associated acyl-CoA thioesterase, at 1,618,218 to 1,618,958 _07825 OLJFJH_07830: OLJFJH_07830 - TonB system transport protein ExbD, at 1,618,964 to 1,619,386 _07830 OLJFJH_07835: OLJFJH_07835 - citrate-proton symporter, at 1,619,439 to 1,620,761 _07835 Position (kb) 1618 1619 1620Strain fitness (log2 ratio) -2 -1 0 1at 1618.036 kb on + strandat 1618.048 kb on + strandat 1618.127 kb on + strandat 1618.198 kb on + strandat 1618.198 kb on + strandat 1618.264 kb on - strandat 1618.544 kb on + strand, within OLJFJH_07825at 1618.545 kb on - strand, within OLJFJH_07825at 1618.670 kb on - strand, within OLJFJH_07825at 1618.715 kb on + strand, within OLJFJH_07825at 1618.806 kb on + strand, within OLJFJH_07825at 1618.806 kb on + strand, within OLJFJH_07825at 1618.806 kb on + strand, within OLJFJH_07825at 1618.807 kb on - strand, within OLJFJH_07825at 1618.807 kb on - strand, within OLJFJH_07825at 1618.807 kb on - strand, within OLJFJH_07825at 1618.813 kb on + strand, within OLJFJH_07825at 1618.814 kb on - strand, within OLJFJH_07825at 1618.814 kb on - strand, within OLJFJH_07825at 1618.814 kb on - strand, within OLJFJH_07825at 1618.836 kb on + strand, within OLJFJH_07825at 1618.837 kb on - strand, within OLJFJH_07825at 1618.837 kb on - strand, within OLJFJH_07825at 1618.837 kb on - strand, within OLJFJH_07825at 1618.837 kb on - strand, within OLJFJH_07825at 1618.880 kb on - strand, within OLJFJH_07825at 1618.951 kb on + strandat 1618.951 kb on + strandat 1618.951 kb on + strandat 1618.964 kb on - strandat 1618.993 kb on + strandat 1619.018 kb on - strand, within OLJFJH_07830at 1619.157 kb on - strand, within OLJFJH_07830at 1619.157 kb on - strand, within OLJFJH_07830at 1619.235 kb on + strand, within OLJFJH_07830at 1619.236 kb on - strand, within OLJFJH_07830at 1619.242 kb on + strand, within OLJFJH_07830at 1619.242 kb on + strand, within OLJFJH_07830at 1619.284 kb on + strand, within OLJFJH_07830at 1619.284 kb on + strand, within OLJFJH_07830at 1619.324 kb on - strand, within OLJFJH_07830at 1619.384 kb on + strandat 1619.385 kb on - strandat 1619.411 kb on + strandat 1619.440 kb on + strandat 1619.440 kb on + strandat 1619.441 kb on - strandat 1619.441 kb on - strandat 1619.441 kb on - strandat 1619.483 kb on - strandat 1619.551 kb on - strandat 1619.567 kb on + strandat 1619.590 kb on + strand, within OLJFJH_07835at 1619.590 kb on + strand, within OLJFJH_07835at 1619.591 kb on - strand, within OLJFJH_07835at 1619.641 kb on + strand, within OLJFJH_07835at 1619.641 kb on + strand, within OLJFJH_07835at 1619.757 kb on + strand, within OLJFJH_07835at 1619.757 kb on + strand, within OLJFJH_07835at 1619.758 kb on - strand, within OLJFJH_07835at 1619.767 kb on - strand, within OLJFJH_07835at 1619.994 kb on - strand, within OLJFJH_07835at 1619.994 kb on - strand, within OLJFJH_07835at 1619.995 kb on + strand, within OLJFJH_07835at 1619.996 kb on - strand, within OLJFJH_07835at 1619.996 kb on - strand, within OLJFJH_07835at 1619.996 kb on - strand, within OLJFJH_07835at 1620.293 kb on + strand, within OLJFJH_07835at 1620.298 kb on + strand, within OLJFJH_07835at 1620.298 kb on + strand, within OLJFJH_07835at 1620.298 kb on + strand, within OLJFJH_07835at 1620.299 kb on - strand, within OLJFJH_07835at 1620.299 kb on - strand, within OLJFJH_07835at 1620.299 kb on - strand, within OLJFJH_07835at 1620.360 kb on + strand, within OLJFJH_07835

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
remove
1,618,036 + +0.2
1,618,048 + +0.3
1,618,127 + +0.9
1,618,198 + -0.4
1,618,198 + -1.9
1,618,264 - +0.3
1,618,544 + OLJFJH_07825 0.44 +0.3
1,618,545 - OLJFJH_07825 0.44 -0.4
1,618,670 - OLJFJH_07825 0.61 -0.1
1,618,715 + OLJFJH_07825 0.67 -0.9
1,618,806 + OLJFJH_07825 0.79 -2.1
1,618,806 + OLJFJH_07825 0.79 -0.9
1,618,806 + OLJFJH_07825 0.79 -0.8
1,618,807 - OLJFJH_07825 0.79 -2.0
1,618,807 - OLJFJH_07825 0.79 +0.2
1,618,807 - OLJFJH_07825 0.79 +0.2
1,618,813 + OLJFJH_07825 0.80 -0.4
1,618,814 - OLJFJH_07825 0.80 -1.4
1,618,814 - OLJFJH_07825 0.80 +1.5
1,618,814 - OLJFJH_07825 0.80 +0.3
1,618,836 + OLJFJH_07825 0.83 -1.5
1,618,837 - OLJFJH_07825 0.84 +0.3
1,618,837 - OLJFJH_07825 0.84 -1.5
1,618,837 - OLJFJH_07825 0.84 -1.2
1,618,837 - OLJFJH_07825 0.84 -1.7
1,618,880 - OLJFJH_07825 0.89 -0.1
1,618,951 + +0.1
1,618,951 + -0.1
1,618,951 + -0.1
1,618,964 - +0.1
1,618,993 + -1.1
1,619,018 - OLJFJH_07830 0.13 -0.1
1,619,157 - OLJFJH_07830 0.46 +0.5
1,619,157 - OLJFJH_07830 0.46 +0.5
1,619,235 + OLJFJH_07830 0.64 -0.4
1,619,236 - OLJFJH_07830 0.64 -0.1
1,619,242 + OLJFJH_07830 0.66 -0.3
1,619,242 + OLJFJH_07830 0.66 -1.1
1,619,284 + OLJFJH_07830 0.76 -1.4
1,619,284 + OLJFJH_07830 0.76 -1.5
1,619,324 - OLJFJH_07830 0.85 -0.8
1,619,384 + -0.2
1,619,385 - -0.1
1,619,411 + +0.2
1,619,440 + -0.1
1,619,440 + -0.4
1,619,441 - -1.3
1,619,441 - +0.1
1,619,441 - -0.2
1,619,483 - -1.9
1,619,551 - +0.2
1,619,567 + -0.7
1,619,590 + OLJFJH_07835 0.11 -0.2
1,619,590 + OLJFJH_07835 0.11 +0.2
1,619,591 - OLJFJH_07835 0.11 -0.2
1,619,641 + OLJFJH_07835 0.15 +0.1
1,619,641 + OLJFJH_07835 0.15 -0.0
1,619,757 + OLJFJH_07835 0.24 +0.3
1,619,757 + OLJFJH_07835 0.24 -0.5
1,619,758 - OLJFJH_07835 0.24 +0.2
1,619,767 - OLJFJH_07835 0.25 +0.1
1,619,994 - OLJFJH_07835 0.42 +0.5
1,619,994 - OLJFJH_07835 0.42 -0.3
1,619,995 + OLJFJH_07835 0.42 +0.0
1,619,996 - OLJFJH_07835 0.42 -0.4
1,619,996 - OLJFJH_07835 0.42 +0.2
1,619,996 - OLJFJH_07835 0.42 +0.3
1,620,293 + OLJFJH_07835 0.65 +0.2
1,620,298 + OLJFJH_07835 0.65 -0.0
1,620,298 + OLJFJH_07835 0.65 -0.3
1,620,298 + OLJFJH_07835 0.65 -0.4
1,620,299 - OLJFJH_07835 0.65 -0.3
1,620,299 - OLJFJH_07835 0.65 -0.0
1,620,299 - OLJFJH_07835 0.65 -0.5
1,620,360 + OLJFJH_07835 0.70 +0.4

Or see this region's nucleotide sequence