Strain Fitness in Erwinia amylovora T8 around OLJFJH_07470

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07465 and OLJFJH_07470 overlap by 4 nucleotidesOLJFJH_07470 and OLJFJH_07475 are separated by 199 nucleotidesOLJFJH_07475 and OLJFJH_07480 are separated by 100 nucleotidesOLJFJH_07480 and OLJFJH_07485 are separated by 107 nucleotides OLJFJH_07465: OLJFJH_07465 - DNA phosphorothioation system sulfurtransferase DndC, at 1,528,699 to 1,530,333 _07465 OLJFJH_07470: OLJFJH_07470 - DNA sulfur modification protein DndB, at 1,530,330 to 1,531,415 _07470 OLJFJH_07475: OLJFJH_07475 - hypothetical protein, at 1,531,615 to 1,531,965 _07475 OLJFJH_07480: OLJFJH_07480 - hypothetical protein, at 1,532,066 to 1,532,209 _07480 OLJFJH_07485: OLJFJH_07485 - Rha family transcriptional regulator, at 1,532,317 to 1,532,514 _07485 Position (kb) 1530 1531 1532Strain fitness (log2 ratio) -3 -2 -1 0 1at 1529.388 kb on + strand, within OLJFJH_07465at 1529.527 kb on - strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.632 kb on - strand, within OLJFJH_07465at 1529.666 kb on - strand, within OLJFJH_07465at 1529.708 kb on + strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.712 kb on + strand, within OLJFJH_07465at 1529.712 kb on + strand, within OLJFJH_07465at 1529.734 kb on - strand, within OLJFJH_07465at 1529.776 kb on + strand, within OLJFJH_07465at 1529.777 kb on - strand, within OLJFJH_07465at 1529.851 kb on - strand, within OLJFJH_07465at 1530.081 kb on + strand, within OLJFJH_07465at 1530.092 kb on - strand, within OLJFJH_07465at 1530.147 kb on - strand, within OLJFJH_07465at 1530.147 kb on - strand, within OLJFJH_07465at 1530.148 kb on + strand, within OLJFJH_07465at 1530.148 kb on + strand, within OLJFJH_07465at 1530.148 kb on + strand, within OLJFJH_07465at 1530.156 kb on + strand, within OLJFJH_07465at 1530.157 kb on - strand, within OLJFJH_07465at 1530.221 kb on + strandat 1530.489 kb on - strand, within OLJFJH_07470at 1530.542 kb on - strand, within OLJFJH_07470at 1530.553 kb on - strand, within OLJFJH_07470at 1530.607 kb on + strand, within OLJFJH_07470at 1530.608 kb on - strand, within OLJFJH_07470at 1530.608 kb on - strand, within OLJFJH_07470at 1530.644 kb on + strand, within OLJFJH_07470at 1530.691 kb on + strand, within OLJFJH_07470at 1530.750 kb on + strand, within OLJFJH_07470at 1530.751 kb on - strand, within OLJFJH_07470at 1530.786 kb on - strand, within OLJFJH_07470at 1530.795 kb on - strand, within OLJFJH_07470at 1530.812 kb on + strand, within OLJFJH_07470at 1530.813 kb on - strand, within OLJFJH_07470at 1530.841 kb on - strand, within OLJFJH_07470at 1530.905 kb on - strand, within OLJFJH_07470at 1531.000 kb on - strand, within OLJFJH_07470at 1531.042 kb on - strand, within OLJFJH_07470at 1531.042 kb on - strand, within OLJFJH_07470at 1531.113 kb on + strand, within OLJFJH_07470at 1531.114 kb on - strand, within OLJFJH_07470at 1531.195 kb on + strand, within OLJFJH_07470at 1531.196 kb on - strand, within OLJFJH_07470at 1531.196 kb on - strand, within OLJFJH_07470at 1531.256 kb on + strand, within OLJFJH_07470at 1531.256 kb on + strand, within OLJFJH_07470at 1531.372 kb on - strandat 1531.372 kb on - strandat 1531.373 kb on + strandat 1531.373 kb on + strandat 1531.374 kb on - strandat 1531.387 kb on + strandat 1531.394 kb on - strandat 1531.415 kb on + strandat 1531.415 kb on + strandat 1531.416 kb on - strandat 1531.416 kb on - strandat 1531.416 kb on - strandat 1531.416 kb on - strandat 1531.420 kb on - strandat 1531.463 kb on - strandat 1531.519 kb on - strandat 1531.534 kb on - strandat 1531.536 kb on + strandat 1531.537 kb on - strandat 1531.569 kb on + strandat 1531.569 kb on + strandat 1531.587 kb on + strandat 1531.587 kb on + strandat 1531.675 kb on - strand, within OLJFJH_07475at 1531.717 kb on - strand, within OLJFJH_07475at 1531.734 kb on + strand, within OLJFJH_07475at 1531.857 kb on + strand, within OLJFJH_07475at 1531.857 kb on + strand, within OLJFJH_07475at 1531.857 kb on + strand, within OLJFJH_07475at 1531.858 kb on - strand, within OLJFJH_07475at 1531.861 kb on - strand, within OLJFJH_07475at 1531.948 kb on - strandat 1532.214 kb on + strandat 1532.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,529,388 + OLJFJH_07465 0.42 +0.3
1,529,527 - OLJFJH_07465 0.51 +0.6
1,529,576 + OLJFJH_07465 0.54 +0.3
1,529,576 + OLJFJH_07465 0.54 -0.3
1,529,576 + OLJFJH_07465 0.54 +0.1
1,529,576 + OLJFJH_07465 0.54 -1.0
1,529,577 - OLJFJH_07465 0.54 -0.5
1,529,577 - OLJFJH_07465 0.54 -0.1
1,529,577 - OLJFJH_07465 0.54 -0.2
1,529,577 - OLJFJH_07465 0.54 -0.2
1,529,577 - OLJFJH_07465 0.54 +0.1
1,529,632 - OLJFJH_07465 0.57 -0.1
1,529,666 - OLJFJH_07465 0.59 +0.1
1,529,708 + OLJFJH_07465 0.62 -0.9
1,529,709 - OLJFJH_07465 0.62 -0.6
1,529,709 - OLJFJH_07465 0.62 +0.3
1,529,709 - OLJFJH_07465 0.62 -0.3
1,529,709 - OLJFJH_07465 0.62 -0.1
1,529,709 - OLJFJH_07465 0.62 -0.0
1,529,712 + OLJFJH_07465 0.62 -0.9
1,529,712 + OLJFJH_07465 0.62 -0.6
1,529,734 - OLJFJH_07465 0.63 -0.0
1,529,776 + OLJFJH_07465 0.66 -1.1
1,529,777 - OLJFJH_07465 0.66 -0.1
1,529,851 - OLJFJH_07465 0.70 -0.2
1,530,081 + OLJFJH_07465 0.85 +0.3
1,530,092 - OLJFJH_07465 0.85 -0.1
1,530,147 - OLJFJH_07465 0.89 -0.0
1,530,147 - OLJFJH_07465 0.89 -0.2
1,530,148 + OLJFJH_07465 0.89 +0.2
1,530,148 + OLJFJH_07465 0.89 -0.1
1,530,148 + OLJFJH_07465 0.89 +0.3
1,530,156 + OLJFJH_07465 0.89 +0.1
1,530,157 - OLJFJH_07465 0.89 +0.0
1,530,221 + -0.3
1,530,489 - OLJFJH_07470 0.15 -3.5
1,530,542 - OLJFJH_07470 0.20 -0.1
1,530,553 - OLJFJH_07470 0.21 -0.3
1,530,607 + OLJFJH_07470 0.26 +0.1
1,530,608 - OLJFJH_07470 0.26 -0.6
1,530,608 - OLJFJH_07470 0.26 -1.3
1,530,644 + OLJFJH_07470 0.29 -0.2
1,530,691 + OLJFJH_07470 0.33 -0.3
1,530,750 + OLJFJH_07470 0.39 -0.7
1,530,751 - OLJFJH_07470 0.39 -0.5
1,530,786 - OLJFJH_07470 0.42 -2.2
1,530,795 - OLJFJH_07470 0.43 -3.7
1,530,812 + OLJFJH_07470 0.44 +0.5
1,530,813 - OLJFJH_07470 0.44 -0.1
1,530,841 - OLJFJH_07470 0.47 -0.4
1,530,905 - OLJFJH_07470 0.53 -2.0
1,531,000 - OLJFJH_07470 0.62 -0.8
1,531,042 - OLJFJH_07470 0.66 -0.6
1,531,042 - OLJFJH_07470 0.66 +0.0
1,531,113 + OLJFJH_07470 0.72 +0.2
1,531,114 - OLJFJH_07470 0.72 -0.0
1,531,195 + OLJFJH_07470 0.80 +1.3
1,531,196 - OLJFJH_07470 0.80 -1.2
1,531,196 - OLJFJH_07470 0.80 -0.7
1,531,256 + OLJFJH_07470 0.85 +0.2
1,531,256 + OLJFJH_07470 0.85 -0.4
1,531,372 - -1.5
1,531,372 - -1.6
1,531,373 + -0.8
1,531,373 + -1.1
1,531,374 - -2.2
1,531,387 + -0.7
1,531,394 - -2.8
1,531,415 + -0.3
1,531,415 + -0.3
1,531,416 - -2.3
1,531,416 - -3.0
1,531,416 - -3.6
1,531,416 - -3.5
1,531,420 - -1.2
1,531,463 - +0.3
1,531,519 - +0.3
1,531,534 - +0.3
1,531,536 + +0.1
1,531,537 - -0.1
1,531,569 + -0.1
1,531,569 + +0.7
1,531,587 + -1.2
1,531,587 + +0.1
1,531,675 - OLJFJH_07475 0.17 +0.0
1,531,717 - OLJFJH_07475 0.29 -0.1
1,531,734 + OLJFJH_07475 0.34 -0.1
1,531,857 + OLJFJH_07475 0.69 -0.1
1,531,857 + OLJFJH_07475 0.69 -0.1
1,531,857 + OLJFJH_07475 0.69 -0.2
1,531,858 - OLJFJH_07475 0.69 +0.4
1,531,861 - OLJFJH_07475 0.70 -0.2
1,531,948 - -0.1
1,532,214 + +0.4
1,532,329 - +0.2

Or see this region's nucleotide sequence