Strain Fitness in Erwinia amylovora T8 around OLJFJH_07070

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_07060 and OLJFJH_07065 are separated by 177 nucleotidesOLJFJH_07065 and OLJFJH_07070 are separated by 22 nucleotidesOLJFJH_07070 and OLJFJH_07075 are separated by 48 nucleotidesOLJFJH_07075 and OLJFJH_07080 are separated by 5 nucleotides OLJFJH_07060: OLJFJH_07060 - PTS IIA-like nitrogen regulatory protein PtsN, at 1,443,304 to 1,443,786 _07060 OLJFJH_07065: OLJFJH_07065 - ribosome hibernation promoting factor, at 1,443,964 to 1,444,251 _07065 OLJFJH_07070: OLJFJH_07070 - RNA polymerase factor sigma-54, at 1,444,274 to 1,445,707 _07070 OLJFJH_07075: OLJFJH_07075 - LPS export ABC transporter ATP-binding protein, at 1,445,756 to 1,446,481 _07075 OLJFJH_07080: OLJFJH_07080 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 1,446,487 to 1,447,038 _07080 Position (kb) 1444 1445 1446Strain fitness (log2 ratio) -2 -1 0 1at 1443.290 kb on - strandat 1443.290 kb on - strandat 1443.290 kb on - strandat 1443.338 kb on + strandat 1443.436 kb on - strand, within OLJFJH_07060at 1443.535 kb on + strand, within OLJFJH_07060at 1443.549 kb on + strand, within OLJFJH_07060at 1443.550 kb on - strand, within OLJFJH_07060at 1443.551 kb on - strand, within OLJFJH_07060at 1443.559 kb on + strand, within OLJFJH_07060at 1443.560 kb on - strand, within OLJFJH_07060at 1443.628 kb on - strand, within OLJFJH_07060at 1443.718 kb on + strand, within OLJFJH_07060at 1443.718 kb on + strand, within OLJFJH_07060at 1443.719 kb on - strand, within OLJFJH_07060at 1443.719 kb on - strand, within OLJFJH_07060at 1443.719 kb on - strand, within OLJFJH_07060at 1443.719 kb on - strand, within OLJFJH_07060at 1443.796 kb on + strandat 1443.797 kb on - strandat 1443.797 kb on - strandat 1443.797 kb on - strandat 1443.797 kb on - strandat 1443.846 kb on - strandat 1443.846 kb on - strandat 1443.965 kb on + strandat 1443.966 kb on - strandat 1443.988 kb on - strandat 1444.040 kb on + strand, within OLJFJH_07065at 1444.040 kb on + strand, within OLJFJH_07065at 1444.040 kb on + strand, within OLJFJH_07065at 1444.041 kb on - strand, within OLJFJH_07065at 1444.041 kb on - strand, within OLJFJH_07065at 1444.045 kb on - strand, within OLJFJH_07065at 1444.045 kb on - strand, within OLJFJH_07065at 1444.045 kb on - strand, within OLJFJH_07065at 1444.050 kb on + strand, within OLJFJH_07065at 1444.050 kb on + strand, within OLJFJH_07065at 1444.084 kb on + strand, within OLJFJH_07065at 1444.085 kb on - strand, within OLJFJH_07065at 1444.129 kb on + strand, within OLJFJH_07065at 1444.139 kb on + strand, within OLJFJH_07065at 1444.139 kb on + strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.164 kb on - strand, within OLJFJH_07065at 1444.354 kb on + strandat 1444.355 kb on - strandat 1444.382 kb on + strandat 1444.428 kb on - strand, within OLJFJH_07070at 1444.543 kb on - strand, within OLJFJH_07070at 1444.567 kb on + strand, within OLJFJH_07070at 1444.567 kb on + strand, within OLJFJH_07070at 1444.601 kb on - strand, within OLJFJH_07070at 1444.880 kb on + strand, within OLJFJH_07070at 1444.881 kb on - strand, within OLJFJH_07070at 1444.897 kb on - strand, within OLJFJH_07070at 1444.897 kb on - strand, within OLJFJH_07070at 1444.897 kb on - strand, within OLJFJH_07070at 1444.897 kb on - strand, within OLJFJH_07070at 1444.897 kb on - strand, within OLJFJH_07070at 1444.897 kb on - strand, within OLJFJH_07070at 1445.260 kb on + strand, within OLJFJH_07070at 1445.261 kb on - strand, within OLJFJH_07070at 1445.261 kb on - strand, within OLJFJH_07070at 1445.325 kb on - strand, within OLJFJH_07070at 1445.340 kb on + strand, within OLJFJH_07070at 1445.340 kb on + strand, within OLJFJH_07070at 1445.340 kb on + strand, within OLJFJH_07070at 1445.340 kb on + strand, within OLJFJH_07070at 1445.340 kb on + strand, within OLJFJH_07070at 1445.340 kb on + strand, within OLJFJH_07070at 1445.340 kb on + strand, within OLJFJH_07070at 1445.341 kb on - strand, within OLJFJH_07070at 1445.341 kb on - strand, within OLJFJH_07070at 1445.341 kb on - strand, within OLJFJH_07070at 1445.434 kb on - strand, within OLJFJH_07070at 1445.434 kb on - strand, within OLJFJH_07070at 1445.434 kb on - strand, within OLJFJH_07070at 1445.434 kb on - strand, within OLJFJH_07070at 1445.434 kb on - strand, within OLJFJH_07070at 1445.609 kb on + strandat 1445.609 kb on + strandat 1445.609 kb on + strandat 1445.610 kb on - strandat 1445.621 kb on - strandat 1445.693 kb on + strandat 1445.694 kb on - strandat 1445.719 kb on + strandat 1445.720 kb on - strandat 1445.740 kb on + strandat 1446.526 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
remove
1,443,290 - +0.0
1,443,290 - -0.6
1,443,290 - +0.9
1,443,338 + +0.0
1,443,436 - OLJFJH_07060 0.27 -2.1
1,443,535 + OLJFJH_07060 0.48 -2.3
1,443,549 + OLJFJH_07060 0.51 -1.3
1,443,550 - OLJFJH_07060 0.51 -0.1
1,443,551 - OLJFJH_07060 0.51 -0.1
1,443,559 + OLJFJH_07060 0.53 +0.1
1,443,560 - OLJFJH_07060 0.53 -0.7
1,443,628 - OLJFJH_07060 0.67 +0.0
1,443,718 + OLJFJH_07060 0.86 -0.5
1,443,718 + OLJFJH_07060 0.86 +0.4
1,443,719 - OLJFJH_07060 0.86 -0.1
1,443,719 - OLJFJH_07060 0.86 -0.4
1,443,719 - OLJFJH_07060 0.86 -0.8
1,443,719 - OLJFJH_07060 0.86 -0.1
1,443,796 + -1.1
1,443,797 - +0.2
1,443,797 - -0.0
1,443,797 - +0.0
1,443,797 - +0.7
1,443,846 - -0.1
1,443,846 - +0.1
1,443,965 + -0.3
1,443,966 - -0.7
1,443,988 - +0.4
1,444,040 + OLJFJH_07065 0.26 +0.7
1,444,040 + OLJFJH_07065 0.26 +0.1
1,444,040 + OLJFJH_07065 0.26 -0.0
1,444,041 - OLJFJH_07065 0.27 +0.4
1,444,041 - OLJFJH_07065 0.27 +0.2
1,444,045 - OLJFJH_07065 0.28 +0.4
1,444,045 - OLJFJH_07065 0.28 -0.7
1,444,045 - OLJFJH_07065 0.28 +0.1
1,444,050 + OLJFJH_07065 0.30 -0.2
1,444,050 + OLJFJH_07065 0.30 -0.6
1,444,084 + OLJFJH_07065 0.42 -0.1
1,444,085 - OLJFJH_07065 0.42 +0.2
1,444,129 + OLJFJH_07065 0.57 -0.1
1,444,139 + OLJFJH_07065 0.61 -0.2
1,444,139 + OLJFJH_07065 0.61 -0.2
1,444,140 - OLJFJH_07065 0.61 -0.3
1,444,140 - OLJFJH_07065 0.61 +0.2
1,444,140 - OLJFJH_07065 0.61 -0.1
1,444,140 - OLJFJH_07065 0.61 +0.1
1,444,140 - OLJFJH_07065 0.61 -0.6
1,444,140 - OLJFJH_07065 0.61 +0.2
1,444,140 - OLJFJH_07065 0.61 -0.0
1,444,164 - OLJFJH_07065 0.69 -0.0
1,444,354 + -0.5
1,444,355 - -0.6
1,444,382 + +0.9
1,444,428 - OLJFJH_07070 0.11 +0.1
1,444,543 - OLJFJH_07070 0.19 -0.8
1,444,567 + OLJFJH_07070 0.20 -0.5
1,444,567 + OLJFJH_07070 0.20 -1.0
1,444,601 - OLJFJH_07070 0.23 +0.4
1,444,880 + OLJFJH_07070 0.42 -1.0
1,444,881 - OLJFJH_07070 0.42 +0.8
1,444,897 - OLJFJH_07070 0.43 -0.3
1,444,897 - OLJFJH_07070 0.43 -0.0
1,444,897 - OLJFJH_07070 0.43 -0.7
1,444,897 - OLJFJH_07070 0.43 -0.7
1,444,897 - OLJFJH_07070 0.43 +1.3
1,444,897 - OLJFJH_07070 0.43 -0.6
1,445,260 + OLJFJH_07070 0.69 -0.8
1,445,261 - OLJFJH_07070 0.69 +0.1
1,445,261 - OLJFJH_07070 0.69 -0.6
1,445,325 - OLJFJH_07070 0.73 -0.6
1,445,340 + OLJFJH_07070 0.74 -0.9
1,445,340 + OLJFJH_07070 0.74 -0.5
1,445,340 + OLJFJH_07070 0.74 -0.5
1,445,340 + OLJFJH_07070 0.74 -1.3
1,445,340 + OLJFJH_07070 0.74 -0.6
1,445,340 + OLJFJH_07070 0.74 +0.5
1,445,340 + OLJFJH_07070 0.74 -0.1
1,445,341 - OLJFJH_07070 0.74 +0.4
1,445,341 - OLJFJH_07070 0.74 -0.9
1,445,341 - OLJFJH_07070 0.74 -0.5
1,445,434 - OLJFJH_07070 0.81 -0.4
1,445,434 - OLJFJH_07070 0.81 -1.6
1,445,434 - OLJFJH_07070 0.81 -1.1
1,445,434 - OLJFJH_07070 0.81 -0.5
1,445,434 - OLJFJH_07070 0.81 +0.2
1,445,609 + -0.7
1,445,609 + -0.7
1,445,609 + +0.5
1,445,610 - -0.5
1,445,621 - -0.3
1,445,693 + +0.5
1,445,694 - -0.3
1,445,719 + -1.1
1,445,720 - -0.2
1,445,740 + -0.2
1,446,526 - -0.2

Or see this region's nucleotide sequence