Strain Fitness in Erwinia amylovora T8 around OLJFJH_07060

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07055 and OLJFJH_07060 are separated by 194 nucleotidesOLJFJH_07060 and OLJFJH_07065 are separated by 177 nucleotidesOLJFJH_07065 and OLJFJH_07070 are separated by 22 nucleotides OLJFJH_07055: OLJFJH_07055 - RNase adapter RapZ, at 1,442,255 to 1,443,109 _07055 OLJFJH_07060: OLJFJH_07060 - PTS IIA-like nitrogen regulatory protein PtsN, at 1,443,304 to 1,443,786 _07060 OLJFJH_07065: OLJFJH_07065 - ribosome hibernation promoting factor, at 1,443,964 to 1,444,251 _07065 OLJFJH_07070: OLJFJH_07070 - RNA polymerase factor sigma-54, at 1,444,274 to 1,445,707 _07070 Position (kb) 1443 1444Strain fitness (log2 ratio) -2 -1 0 1 2at 1442.341 kb on + strand, within OLJFJH_07055at 1442.341 kb on + strand, within OLJFJH_07055at 1442.341 kb on + strand, within OLJFJH_07055at 1442.342 kb on - strand, within OLJFJH_07055at 1442.342 kb on - strand, within OLJFJH_07055at 1442.342 kb on - strand, within OLJFJH_07055at 1442.342 kb on - strand, within OLJFJH_07055at 1442.342 kb on - strand, within OLJFJH_07055at 1442.342 kb on - strand, within OLJFJH_07055at 1442.342 kb on - strand, within OLJFJH_07055at 1442.342 kb on - strand, within OLJFJH_07055at 1442.343 kb on + strand, within OLJFJH_07055at 1442.343 kb on + strand, within OLJFJH_07055at 1442.343 kb on + strand, within OLJFJH_07055at 1442.343 kb on + strand, within OLJFJH_07055at 1442.344 kb on - strand, within OLJFJH_07055at 1442.344 kb on - strand, within OLJFJH_07055at 1442.344 kb on - strand, within OLJFJH_07055at 1442.344 kb on - strand, within OLJFJH_07055at 1442.346 kb on - strand, within OLJFJH_07055at 1442.360 kb on - strand, within OLJFJH_07055at 1442.391 kb on + strand, within OLJFJH_07055at 1442.392 kb on - strand, within OLJFJH_07055at 1442.436 kb on + strand, within OLJFJH_07055at 1442.436 kb on + strand, within OLJFJH_07055at 1442.437 kb on - strand, within OLJFJH_07055at 1442.455 kb on + strand, within OLJFJH_07055at 1442.456 kb on - strand, within OLJFJH_07055at 1442.473 kb on + strand, within OLJFJH_07055at 1442.624 kb on + strand, within OLJFJH_07055at 1442.704 kb on + strand, within OLJFJH_07055at 1442.705 kb on - strand, within OLJFJH_07055at 1442.913 kb on - strand, within OLJFJH_07055at 1442.936 kb on - strand, within OLJFJH_07055at 1442.948 kb on - strand, within OLJFJH_07055at 1443.006 kb on - strand, within OLJFJH_07055at 1443.006 kb on - strand, within OLJFJH_07055at 1443.006 kb on - strand, within OLJFJH_07055at 1443.014 kb on + strand, within OLJFJH_07055at 1443.031 kb on - strandat 1443.041 kb on - strandat 1443.041 kb on - strandat 1443.111 kb on + strandat 1443.111 kb on + strandat 1443.111 kb on + strandat 1443.265 kb on + strandat 1443.290 kb on - strandat 1443.290 kb on - strandat 1443.290 kb on - strandat 1443.338 kb on + strandat 1443.436 kb on - strand, within OLJFJH_07060at 1443.535 kb on + strand, within OLJFJH_07060at 1443.549 kb on + strand, within OLJFJH_07060at 1443.550 kb on - strand, within OLJFJH_07060at 1443.551 kb on - strand, within OLJFJH_07060at 1443.559 kb on + strand, within OLJFJH_07060at 1443.560 kb on - strand, within OLJFJH_07060at 1443.628 kb on - strand, within OLJFJH_07060at 1443.718 kb on + strand, within OLJFJH_07060at 1443.718 kb on + strand, within OLJFJH_07060at 1443.719 kb on - strand, within OLJFJH_07060at 1443.719 kb on - strand, within OLJFJH_07060at 1443.719 kb on - strand, within OLJFJH_07060at 1443.719 kb on - strand, within OLJFJH_07060at 1443.796 kb on + strandat 1443.797 kb on - strandat 1443.797 kb on - strandat 1443.797 kb on - strandat 1443.797 kb on - strandat 1443.846 kb on - strandat 1443.846 kb on - strandat 1443.965 kb on + strandat 1443.966 kb on - strandat 1443.988 kb on - strandat 1444.040 kb on + strand, within OLJFJH_07065at 1444.040 kb on + strand, within OLJFJH_07065at 1444.040 kb on + strand, within OLJFJH_07065at 1444.041 kb on - strand, within OLJFJH_07065at 1444.041 kb on - strand, within OLJFJH_07065at 1444.045 kb on - strand, within OLJFJH_07065at 1444.045 kb on - strand, within OLJFJH_07065at 1444.045 kb on - strand, within OLJFJH_07065at 1444.050 kb on + strand, within OLJFJH_07065at 1444.050 kb on + strand, within OLJFJH_07065at 1444.084 kb on + strand, within OLJFJH_07065at 1444.085 kb on - strand, within OLJFJH_07065at 1444.129 kb on + strand, within OLJFJH_07065at 1444.139 kb on + strand, within OLJFJH_07065at 1444.139 kb on + strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.140 kb on - strand, within OLJFJH_07065at 1444.164 kb on - strand, within OLJFJH_07065at 1444.354 kb on + strandat 1444.355 kb on - strandat 1444.382 kb on + strandat 1444.428 kb on - strand, within OLJFJH_07070at 1444.543 kb on - strand, within OLJFJH_07070at 1444.567 kb on + strand, within OLJFJH_07070at 1444.567 kb on + strand, within OLJFJH_07070at 1444.601 kb on - strand, within OLJFJH_07070

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,442,341 + OLJFJH_07055 0.10 -0.1
1,442,341 + OLJFJH_07055 0.10 +0.3
1,442,341 + OLJFJH_07055 0.10 +0.4
1,442,342 - OLJFJH_07055 0.10 +0.0
1,442,342 - OLJFJH_07055 0.10 -0.6
1,442,342 - OLJFJH_07055 0.10 +0.6
1,442,342 - OLJFJH_07055 0.10 +0.1
1,442,342 - OLJFJH_07055 0.10 +0.1
1,442,342 - OLJFJH_07055 0.10 +0.6
1,442,342 - OLJFJH_07055 0.10 +0.1
1,442,342 - OLJFJH_07055 0.10 +0.4
1,442,343 + OLJFJH_07055 0.10 -0.4
1,442,343 + OLJFJH_07055 0.10 +0.2
1,442,343 + OLJFJH_07055 0.10 -0.7
1,442,343 + OLJFJH_07055 0.10 -0.4
1,442,344 - OLJFJH_07055 0.10 +0.2
1,442,344 - OLJFJH_07055 0.10 +0.9
1,442,344 - OLJFJH_07055 0.10 +0.4
1,442,344 - OLJFJH_07055 0.10 -0.7
1,442,346 - OLJFJH_07055 0.11 +0.5
1,442,360 - OLJFJH_07055 0.12 +0.8
1,442,391 + OLJFJH_07055 0.16 +2.5
1,442,392 - OLJFJH_07055 0.16 -0.2
1,442,436 + OLJFJH_07055 0.21 -0.4
1,442,436 + OLJFJH_07055 0.21 -0.4
1,442,437 - OLJFJH_07055 0.21 +0.4
1,442,455 + OLJFJH_07055 0.23 +0.2
1,442,456 - OLJFJH_07055 0.24 -0.1
1,442,473 + OLJFJH_07055 0.25 -0.3
1,442,624 + OLJFJH_07055 0.43 -0.5
1,442,704 + OLJFJH_07055 0.53 +0.1
1,442,705 - OLJFJH_07055 0.53 +0.8
1,442,913 - OLJFJH_07055 0.77 -0.3
1,442,936 - OLJFJH_07055 0.80 +0.1
1,442,948 - OLJFJH_07055 0.81 +0.2
1,443,006 - OLJFJH_07055 0.88 +0.2
1,443,006 - OLJFJH_07055 0.88 -0.3
1,443,006 - OLJFJH_07055 0.88 +0.3
1,443,014 + OLJFJH_07055 0.89 +1.5
1,443,031 - +0.3
1,443,041 - -0.2
1,443,041 - +0.5
1,443,111 + -0.9
1,443,111 + -0.4
1,443,111 + -0.5
1,443,265 + +0.2
1,443,290 - +0.0
1,443,290 - -0.6
1,443,290 - +0.9
1,443,338 + +0.0
1,443,436 - OLJFJH_07060 0.27 -2.1
1,443,535 + OLJFJH_07060 0.48 -2.3
1,443,549 + OLJFJH_07060 0.51 -1.3
1,443,550 - OLJFJH_07060 0.51 -0.1
1,443,551 - OLJFJH_07060 0.51 -0.1
1,443,559 + OLJFJH_07060 0.53 +0.1
1,443,560 - OLJFJH_07060 0.53 -0.7
1,443,628 - OLJFJH_07060 0.67 +0.0
1,443,718 + OLJFJH_07060 0.86 -0.5
1,443,718 + OLJFJH_07060 0.86 +0.4
1,443,719 - OLJFJH_07060 0.86 -0.1
1,443,719 - OLJFJH_07060 0.86 -0.4
1,443,719 - OLJFJH_07060 0.86 -0.8
1,443,719 - OLJFJH_07060 0.86 -0.1
1,443,796 + -1.1
1,443,797 - +0.2
1,443,797 - -0.0
1,443,797 - +0.0
1,443,797 - +0.7
1,443,846 - -0.1
1,443,846 - +0.1
1,443,965 + -0.3
1,443,966 - -0.7
1,443,988 - +0.4
1,444,040 + OLJFJH_07065 0.26 +0.7
1,444,040 + OLJFJH_07065 0.26 +0.1
1,444,040 + OLJFJH_07065 0.26 -0.0
1,444,041 - OLJFJH_07065 0.27 +0.4
1,444,041 - OLJFJH_07065 0.27 +0.2
1,444,045 - OLJFJH_07065 0.28 +0.4
1,444,045 - OLJFJH_07065 0.28 -0.7
1,444,045 - OLJFJH_07065 0.28 +0.1
1,444,050 + OLJFJH_07065 0.30 -0.2
1,444,050 + OLJFJH_07065 0.30 -0.6
1,444,084 + OLJFJH_07065 0.42 -0.1
1,444,085 - OLJFJH_07065 0.42 +0.2
1,444,129 + OLJFJH_07065 0.57 -0.1
1,444,139 + OLJFJH_07065 0.61 -0.2
1,444,139 + OLJFJH_07065 0.61 -0.2
1,444,140 - OLJFJH_07065 0.61 -0.3
1,444,140 - OLJFJH_07065 0.61 +0.2
1,444,140 - OLJFJH_07065 0.61 -0.1
1,444,140 - OLJFJH_07065 0.61 +0.1
1,444,140 - OLJFJH_07065 0.61 -0.6
1,444,140 - OLJFJH_07065 0.61 +0.2
1,444,140 - OLJFJH_07065 0.61 -0.0
1,444,164 - OLJFJH_07065 0.69 -0.0
1,444,354 + -0.5
1,444,355 - -0.6
1,444,382 + +0.9
1,444,428 - OLJFJH_07070 0.11 +0.1
1,444,543 - OLJFJH_07070 0.19 -0.8
1,444,567 + OLJFJH_07070 0.20 -0.5
1,444,567 + OLJFJH_07070 0.20 -1.0
1,444,601 - OLJFJH_07070 0.23 +0.4

Or see this region's nucleotide sequence