Strain Fitness in Erwinia amylovora T8 around OLJFJH_07040

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_07035 and OLJFJH_07040 overlap by 4 nucleotidesOLJFJH_07040 and OLJFJH_07045 are separated by 682 nucleotides OLJFJH_07035: OLJFJH_07035 - aerobic respiration two-component sensor histidine kinase ArcB, at 1,438,056 to 1,440,395 _07035 OLJFJH_07040: OLJFJH_07040 - hypothetical protein, at 1,440,392 to 1,440,502 _07040 OLJFJH_07045: OLJFJH_07045 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,441,185 to 1,441,910 _07045 Position (kb) 1440 1441Strain fitness (log2 ratio) -2 -1 0 1at 1439.415 kb on + strand, within OLJFJH_07035at 1439.415 kb on + strand, within OLJFJH_07035at 1439.416 kb on - strand, within OLJFJH_07035at 1439.416 kb on - strand, within OLJFJH_07035at 1439.416 kb on - strand, within OLJFJH_07035at 1439.416 kb on - strand, within OLJFJH_07035at 1439.744 kb on + strand, within OLJFJH_07035at 1440.058 kb on + strand, within OLJFJH_07035at 1440.075 kb on + strand, within OLJFJH_07035at 1440.075 kb on + strand, within OLJFJH_07035at 1440.076 kb on - strand, within OLJFJH_07035at 1440.076 kb on - strand, within OLJFJH_07035at 1440.077 kb on + strand, within OLJFJH_07035at 1440.077 kb on + strand, within OLJFJH_07035at 1440.077 kb on + strand, within OLJFJH_07035at 1440.078 kb on - strand, within OLJFJH_07035at 1440.329 kb on + strandat 1440.448 kb on + strand, within OLJFJH_07040at 1440.466 kb on + strand, within OLJFJH_07040at 1440.467 kb on - strand, within OLJFJH_07040at 1440.507 kb on + strandat 1440.523 kb on + strandat 1440.528 kb on + strandat 1440.814 kb on + strandat 1440.836 kb on - strandat 1440.874 kb on - strandat 1440.941 kb on + strandat 1441.182 kb on + strandat 1441.182 kb on + strandat 1441.182 kb on + strandat 1441.233 kb on - strandat 1441.261 kb on + strand, within OLJFJH_07045at 1441.262 kb on - strand, within OLJFJH_07045at 1441.262 kb on - strand, within OLJFJH_07045at 1441.362 kb on + strand, within OLJFJH_07045at 1441.362 kb on + strand, within OLJFJH_07045at 1441.362 kb on + strand, within OLJFJH_07045at 1441.363 kb on - strand, within OLJFJH_07045at 1441.363 kb on - strand, within OLJFJH_07045at 1441.397 kb on + strand, within OLJFJH_07045at 1441.398 kb on - strand, within OLJFJH_07045at 1441.398 kb on - strand, within OLJFJH_07045at 1441.399 kb on + strand, within OLJFJH_07045at 1441.399 kb on + strand, within OLJFJH_07045at 1441.399 kb on + strand, within OLJFJH_07045at 1441.400 kb on - strand, within OLJFJH_07045at 1441.400 kb on - strand, within OLJFJH_07045at 1441.400 kb on - strand, within OLJFJH_07045at 1441.447 kb on - strand, within OLJFJH_07045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
remove
1,439,415 + OLJFJH_07035 0.58 -2.5
1,439,415 + OLJFJH_07035 0.58 -1.4
1,439,416 - OLJFJH_07035 0.58 +0.9
1,439,416 - OLJFJH_07035 0.58 +0.5
1,439,416 - OLJFJH_07035 0.58 -1.1
1,439,416 - OLJFJH_07035 0.58 -0.2
1,439,744 + OLJFJH_07035 0.72 -1.1
1,440,058 + OLJFJH_07035 0.86 -0.6
1,440,075 + OLJFJH_07035 0.86 -2.1
1,440,075 + OLJFJH_07035 0.86 +0.5
1,440,076 - OLJFJH_07035 0.86 -1.4
1,440,076 - OLJFJH_07035 0.86 -1.1
1,440,077 + OLJFJH_07035 0.86 +0.4
1,440,077 + OLJFJH_07035 0.86 -1.2
1,440,077 + OLJFJH_07035 0.86 -0.9
1,440,078 - OLJFJH_07035 0.86 -0.1
1,440,329 + -0.6
1,440,448 + OLJFJH_07040 0.50 -1.2
1,440,466 + OLJFJH_07040 0.67 -0.1
1,440,467 - OLJFJH_07040 0.68 -0.9
1,440,507 + -0.1
1,440,523 + -0.3
1,440,528 + -0.7
1,440,814 + +0.2
1,440,836 - -0.0
1,440,874 - -0.0
1,440,941 + -0.0
1,441,182 + -0.6
1,441,182 + +0.9
1,441,182 + +0.3
1,441,233 - -0.4
1,441,261 + OLJFJH_07045 0.10 -0.1
1,441,262 - OLJFJH_07045 0.11 -0.4
1,441,262 - OLJFJH_07045 0.11 +0.3
1,441,362 + OLJFJH_07045 0.24 +0.4
1,441,362 + OLJFJH_07045 0.24 +0.3
1,441,362 + OLJFJH_07045 0.24 -0.2
1,441,363 - OLJFJH_07045 0.25 -0.3
1,441,363 - OLJFJH_07045 0.25 -0.3
1,441,397 + OLJFJH_07045 0.29 +0.0
1,441,398 - OLJFJH_07045 0.29 -0.6
1,441,398 - OLJFJH_07045 0.29 -0.3
1,441,399 + OLJFJH_07045 0.29 +0.0
1,441,399 + OLJFJH_07045 0.29 +0.4
1,441,399 + OLJFJH_07045 0.29 +0.8
1,441,400 - OLJFJH_07045 0.30 +0.4
1,441,400 - OLJFJH_07045 0.30 -0.3
1,441,400 - OLJFJH_07045 0.30 +0.8
1,441,447 - OLJFJH_07045 0.36 +0.0

Or see this region's nucleotide sequence