Strain Fitness in Erwinia amylovora T8 around OLJFJH_07015

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07005 and OLJFJH_07010 are separated by 15 nucleotidesOLJFJH_07010 and OLJFJH_07015 are separated by 308 nucleotidesOLJFJH_07015 and OLJFJH_07020 are separated by 4 nucleotidesOLJFJH_07020 and OLJFJH_07025 are separated by 143 nucleotides OLJFJH_07005: OLJFJH_07005 - 50S ribosomal protein L13, at 1,427,307 to 1,427,735 _07005 OLJFJH_07010: OLJFJH_07010 - 30S ribosomal protein S9, at 1,427,751 to 1,428,143 _07010 OLJFJH_07015: OLJFJH_07015 - stringent starvation protein A, at 1,428,452 to 1,429,093 _07015 OLJFJH_07020: OLJFJH_07020 - ClpXP protease specificity-enhancing factor, at 1,429,098 to 1,429,595 _07020 OLJFJH_07025: OLJFJH_07025 - sulfite reductase subunit alpha, at 1,429,739 to 1,431,496 _07025 Position (kb) 1428 1429 1430Strain fitness (log2 ratio) -2 -1 0 1at 1428.248 kb on - strandat 1428.308 kb on - strandat 1428.308 kb on - strandat 1428.525 kb on + strand, within OLJFJH_07015at 1428.525 kb on + strand, within OLJFJH_07015at 1428.534 kb on + strand, within OLJFJH_07015at 1428.535 kb on - strand, within OLJFJH_07015at 1428.726 kb on - strand, within OLJFJH_07015at 1428.839 kb on - strand, within OLJFJH_07015at 1428.886 kb on + strand, within OLJFJH_07015at 1428.898 kb on + strand, within OLJFJH_07015at 1428.899 kb on - strand, within OLJFJH_07015at 1428.975 kb on + strand, within OLJFJH_07015at 1429.007 kb on + strand, within OLJFJH_07015at 1429.008 kb on - strand, within OLJFJH_07015at 1429.010 kb on - strand, within OLJFJH_07015at 1429.010 kb on - strand, within OLJFJH_07015at 1429.094 kb on + strandat 1429.094 kb on + strandat 1429.095 kb on - strandat 1429.132 kb on - strandat 1429.149 kb on + strand, within OLJFJH_07020at 1429.150 kb on - strand, within OLJFJH_07020at 1429.291 kb on + strand, within OLJFJH_07020at 1429.377 kb on + strand, within OLJFJH_07020at 1429.425 kb on + strand, within OLJFJH_07020at 1429.426 kb on - strand, within OLJFJH_07020at 1429.639 kb on + strandat 1429.683 kb on + strandat 1429.741 kb on - strandat 1429.743 kb on + strandat 1429.743 kb on + strandat 1429.743 kb on + strandat 1429.759 kb on - strandat 1429.788 kb on + strandat 1429.789 kb on - strandat 1429.789 kb on - strandat 1429.839 kb on + strandat 1429.839 kb on + strandat 1429.840 kb on - strandat 1429.890 kb on + strandat 1429.890 kb on + strandat 1429.891 kb on - strandat 1429.891 kb on - strandat 1429.891 kb on - strandat 1429.911 kb on - strandat 1429.956 kb on - strand, within OLJFJH_07025at 1430.046 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.050 kb on + strand, within OLJFJH_07025at 1430.051 kb on - strand, within OLJFJH_07025at 1430.051 kb on - strand, within OLJFJH_07025at 1430.051 kb on - strand, within OLJFJH_07025at 1430.051 kb on - strand, within OLJFJH_07025at 1430.051 kb on - strand, within OLJFJH_07025at 1430.051 kb on - strand, within OLJFJH_07025at 1430.052 kb on + strand, within OLJFJH_07025at 1430.052 kb on + strand, within OLJFJH_07025at 1430.052 kb on + strand, within OLJFJH_07025at 1430.052 kb on + strand, within OLJFJH_07025at 1430.052 kb on + strand, within OLJFJH_07025at 1430.053 kb on - strand, within OLJFJH_07025at 1430.053 kb on - strand, within OLJFJH_07025at 1430.053 kb on - strand, within OLJFJH_07025at 1430.053 kb on - strand, within OLJFJH_07025at 1430.053 kb on - strand, within OLJFJH_07025

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,428,248 - -0.2
1,428,308 - -0.6
1,428,308 - +0.9
1,428,525 + OLJFJH_07015 0.11 -0.1
1,428,525 + OLJFJH_07015 0.11 -0.6
1,428,534 + OLJFJH_07015 0.13 -1.6
1,428,535 - OLJFJH_07015 0.13 +0.9
1,428,726 - OLJFJH_07015 0.43 -0.6
1,428,839 - OLJFJH_07015 0.60 -0.6
1,428,886 + OLJFJH_07015 0.68 +0.9
1,428,898 + OLJFJH_07015 0.69 -0.1
1,428,899 - OLJFJH_07015 0.70 +0.9
1,428,975 + OLJFJH_07015 0.81 -0.6
1,429,007 + OLJFJH_07015 0.86 -1.1
1,429,008 - OLJFJH_07015 0.87 +0.9
1,429,010 - OLJFJH_07015 0.87 -0.1
1,429,010 - OLJFJH_07015 0.87 +0.9
1,429,094 + -0.1
1,429,094 + +0.5
1,429,095 - +0.4
1,429,132 - -0.1
1,429,149 + OLJFJH_07020 0.10 +0.1
1,429,150 - OLJFJH_07020 0.10 -0.1
1,429,291 + OLJFJH_07020 0.39 +0.3
1,429,377 + OLJFJH_07020 0.56 -1.0
1,429,425 + OLJFJH_07020 0.66 +0.3
1,429,426 - OLJFJH_07020 0.66 -0.2
1,429,639 + -0.1
1,429,683 + +0.2
1,429,741 - -0.3
1,429,743 + +1.3
1,429,743 + -0.1
1,429,743 + -1.5
1,429,759 - -0.5
1,429,788 + -0.0
1,429,789 - -2.1
1,429,789 - -0.1
1,429,839 + -0.1
1,429,839 + -0.3
1,429,840 - -0.1
1,429,890 + -0.3
1,429,890 + +0.2
1,429,891 - -0.4
1,429,891 - -0.3
1,429,891 - -0.1
1,429,911 - +0.1
1,429,956 - OLJFJH_07025 0.12 +1.4
1,430,046 + OLJFJH_07025 0.17 +0.6
1,430,050 + OLJFJH_07025 0.18 -0.3
1,430,050 + OLJFJH_07025 0.18 +0.2
1,430,050 + OLJFJH_07025 0.18 -0.7
1,430,050 + OLJFJH_07025 0.18 -0.5
1,430,050 + OLJFJH_07025 0.18 -0.0
1,430,050 + OLJFJH_07025 0.18 +0.1
1,430,050 + OLJFJH_07025 0.18 -0.5
1,430,050 + OLJFJH_07025 0.18 -0.4
1,430,050 + OLJFJH_07025 0.18 -0.3
1,430,050 + OLJFJH_07025 0.18 -0.2
1,430,050 + OLJFJH_07025 0.18 +0.7
1,430,050 + OLJFJH_07025 0.18 +0.2
1,430,051 - OLJFJH_07025 0.18 -0.3
1,430,051 - OLJFJH_07025 0.18 -0.4
1,430,051 - OLJFJH_07025 0.18 -0.7
1,430,051 - OLJFJH_07025 0.18 -1.2
1,430,051 - OLJFJH_07025 0.18 -0.7
1,430,051 - OLJFJH_07025 0.18 +0.2
1,430,052 + OLJFJH_07025 0.18 -0.0
1,430,052 + OLJFJH_07025 0.18 -0.4
1,430,052 + OLJFJH_07025 0.18 +0.6
1,430,052 + OLJFJH_07025 0.18 +0.0
1,430,052 + OLJFJH_07025 0.18 -0.5
1,430,053 - OLJFJH_07025 0.18 +0.2
1,430,053 - OLJFJH_07025 0.18 -0.6
1,430,053 - OLJFJH_07025 0.18 -0.4
1,430,053 - OLJFJH_07025 0.18 -0.0
1,430,053 - OLJFJH_07025 0.18 -0.6

Or see this region's nucleotide sequence