Strain Fitness in Erwinia amylovora T8 around OLJFJH_06975

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06965 and OLJFJH_06970 are separated by 111 nucleotidesOLJFJH_06970 and OLJFJH_06975 are separated by 495 nucleotidesOLJFJH_06975 and OLJFJH_06980 are separated by 444 nucleotides OLJFJH_06965: OLJFJH_06965 - peroxide/acid stress response protein YhcN, at 1,419,621 to 1,419,890 _06965 OLJFJH_06970: OLJFJH_06970 - peroxide/acid stress response protein YhcN, at 1,420,002 to 1,420,265 _06970 OLJFJH_06975: OLJFJH_06975 - transcriptional regulator ArgR, at 1,420,761 to 1,421,231 _06975 OLJFJH_06980: OLJFJH_06980 - malate dehydrogenase, at 1,421,676 to 1,422,611 _06980 Position (kb) 1420 1421 1422Strain fitness (log2 ratio) -2 -1 0 1 2at 1419.783 kb on + strand, within OLJFJH_06965at 1419.783 kb on + strand, within OLJFJH_06965at 1419.783 kb on + strand, within OLJFJH_06965at 1419.904 kb on + strandat 1419.905 kb on - strandat 1419.908 kb on + strandat 1419.923 kb on + strandat 1419.947 kb on - strandat 1419.948 kb on + strandat 1419.965 kb on + strandat 1419.986 kb on + strandat 1420.004 kb on - strandat 1420.004 kb on - strandat 1420.262 kb on - strandat 1420.328 kb on + strandat 1420.337 kb on - strandat 1420.404 kb on + strandat 1420.419 kb on - strandat 1420.547 kb on - strandat 1420.550 kb on - strandat 1420.579 kb on + strandat 1420.579 kb on + strandat 1420.762 kb on + strandat 1420.836 kb on - strand, within OLJFJH_06975at 1421.003 kb on + strand, within OLJFJH_06975at 1421.003 kb on + strand, within OLJFJH_06975at 1421.004 kb on - strand, within OLJFJH_06975at 1421.004 kb on - strand, within OLJFJH_06975at 1421.004 kb on - strand, within OLJFJH_06975at 1421.008 kb on - strand, within OLJFJH_06975at 1421.088 kb on - strand, within OLJFJH_06975at 1421.088 kb on - strand, within OLJFJH_06975at 1421.198 kb on + strandat 1421.231 kb on + strandat 1421.231 kb on + strandat 1421.232 kb on - strandat 1421.232 kb on - strandat 1421.433 kb on - strandat 1421.434 kb on + strandat 1421.434 kb on + strandat 1421.434 kb on + strandat 1421.461 kb on + strandat 1421.469 kb on + strandat 1421.469 kb on + strandat 1421.469 kb on + strandat 1421.469 kb on + strandat 1421.470 kb on - strandat 1421.502 kb on + strandat 1421.581 kb on + strandat 1421.582 kb on - strandat 1421.659 kb on - strandat 1421.659 kb on - strandat 1421.661 kb on - strandat 1421.670 kb on + strandat 1421.671 kb on - strandat 1421.673 kb on - strandat 1421.673 kb on - strandat 1421.813 kb on - strand, within OLJFJH_06980at 1421.918 kb on + strand, within OLJFJH_06980at 1422.020 kb on + strand, within OLJFJH_06980at 1422.098 kb on + strand, within OLJFJH_06980at 1422.140 kb on + strand, within OLJFJH_06980at 1422.140 kb on + strand, within OLJFJH_06980at 1422.141 kb on - strand, within OLJFJH_06980at 1422.166 kb on + strand, within OLJFJH_06980

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,419,783 + OLJFJH_06965 0.60 -0.1
1,419,783 + OLJFJH_06965 0.60 -0.4
1,419,783 + OLJFJH_06965 0.60 -0.2
1,419,904 + -0.0
1,419,905 - +0.2
1,419,908 + -0.2
1,419,923 + +0.4
1,419,947 - +0.1
1,419,948 + +0.4
1,419,965 + -0.7
1,419,986 + -0.2
1,420,004 - -1.1
1,420,004 - +0.2
1,420,262 - +0.2
1,420,328 + +0.8
1,420,337 - +0.0
1,420,404 + -0.6
1,420,419 - +0.3
1,420,547 - -0.3
1,420,550 - +0.2
1,420,579 + -0.1
1,420,579 + +0.2
1,420,762 + +0.9
1,420,836 - OLJFJH_06975 0.16 -0.7
1,421,003 + OLJFJH_06975 0.51 -1.8
1,421,003 + OLJFJH_06975 0.51 +0.4
1,421,004 - OLJFJH_06975 0.52 +0.1
1,421,004 - OLJFJH_06975 0.52 -0.6
1,421,004 - OLJFJH_06975 0.52 -1.4
1,421,008 - OLJFJH_06975 0.52 -0.5
1,421,088 - OLJFJH_06975 0.69 -1.0
1,421,088 - OLJFJH_06975 0.69 -0.4
1,421,198 + -0.6
1,421,231 + -0.5
1,421,231 + +0.1
1,421,232 - -0.5
1,421,232 - -0.7
1,421,433 - +0.2
1,421,434 + +0.1
1,421,434 + +0.2
1,421,434 + +0.3
1,421,461 + -0.5
1,421,469 + -0.2
1,421,469 + -0.5
1,421,469 + -0.3
1,421,469 + +0.1
1,421,470 - -0.5
1,421,502 + +1.5
1,421,581 + +0.2
1,421,582 - -0.0
1,421,659 - -0.5
1,421,659 - +0.2
1,421,661 - -1.1
1,421,670 + -0.2
1,421,671 - +0.0
1,421,673 - -0.5
1,421,673 - -0.3
1,421,813 - OLJFJH_06980 0.15 +2.3
1,421,918 + OLJFJH_06980 0.26 -0.2
1,422,020 + OLJFJH_06980 0.37 -0.2
1,422,098 + OLJFJH_06980 0.45 -0.5
1,422,140 + OLJFJH_06980 0.50 +0.1
1,422,140 + OLJFJH_06980 0.50 +0.1
1,422,141 - OLJFJH_06980 0.50 -0.7
1,422,166 + OLJFJH_06980 0.52 -0.1

Or see this region's nucleotide sequence