Strain Fitness in Erwinia amylovora T8 around OLJFJH_06930

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06920 and OLJFJH_06925 are separated by 9 nucleotidesOLJFJH_06925 and OLJFJH_06930 are separated by 1 nucleotidesOLJFJH_06930 and OLJFJH_06935 are separated by 68 nucleotides OLJFJH_06920: OLJFJH_06920 - rod shape-determining protein MreD, at 1,407,025 to 1,407,513 _06920 OLJFJH_06925: OLJFJH_06925 - septum formation inhibitor Maf, at 1,407,523 to 1,408,104 _06925 OLJFJH_06930: OLJFJH_06930 - ribonuclease G, at 1,408,106 to 1,409,575 _06930 OLJFJH_06935: OLJFJH_06935 - DUF3971 domain-containing protein, at 1,409,644 to 1,413,441 _06935 Position (kb) 1408 1409 1410Strain fitness (log2 ratio) -2 -1 0 1 2at 1407.520 kb on + strandat 1407.520 kb on + strandat 1407.520 kb on + strandat 1407.520 kb on + strandat 1407.520 kb on + strandat 1407.520 kb on + strandat 1407.520 kb on + strandat 1407.520 kb on + strandat 1407.520 kb on + strandat 1407.521 kb on - strandat 1407.521 kb on - strandat 1407.521 kb on - strandat 1407.521 kb on - strandat 1407.521 kb on - strandat 1407.521 kb on - strandat 1407.521 kb on - strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.522 kb on + strandat 1407.523 kb on - strandat 1407.523 kb on - strandat 1407.523 kb on - strandat 1407.523 kb on - strandat 1407.523 kb on - strandat 1407.523 kb on - strandat 1407.523 kb on - strandat 1407.523 kb on - strandat 1407.523 kb on - strandat 1407.523 kb on - strandat 1407.523 kb on - strandat 1407.535 kb on + strandat 1407.536 kb on - strandat 1407.623 kb on + strand, within OLJFJH_06925at 1407.624 kb on - strand, within OLJFJH_06925at 1407.624 kb on - strand, within OLJFJH_06925at 1407.652 kb on + strand, within OLJFJH_06925at 1407.652 kb on + strand, within OLJFJH_06925at 1407.653 kb on - strand, within OLJFJH_06925at 1407.722 kb on + strand, within OLJFJH_06925at 1407.931 kb on + strand, within OLJFJH_06925at 1407.931 kb on + strand, within OLJFJH_06925at 1407.931 kb on + strand, within OLJFJH_06925at 1407.931 kb on + strand, within OLJFJH_06925at 1407.931 kb on + strand, within OLJFJH_06925at 1407.932 kb on - strand, within OLJFJH_06925at 1407.932 kb on - strand, within OLJFJH_06925at 1407.932 kb on - strand, within OLJFJH_06925at 1407.932 kb on - strand, within OLJFJH_06925at 1407.975 kb on + strand, within OLJFJH_06925at 1408.105 kb on + strandat 1408.119 kb on + strandat 1408.130 kb on - strandat 1408.157 kb on + strandat 1408.158 kb on - strandat 1408.226 kb on - strandat 1408.226 kb on - strandat 1408.229 kb on + strandat 1408.229 kb on + strandat 1408.229 kb on + strandat 1408.321 kb on + strand, within OLJFJH_06930at 1408.325 kb on - strand, within OLJFJH_06930at 1408.426 kb on - strand, within OLJFJH_06930at 1408.428 kb on + strand, within OLJFJH_06930at 1408.501 kb on + strand, within OLJFJH_06930at 1408.538 kb on - strand, within OLJFJH_06930at 1408.619 kb on - strand, within OLJFJH_06930at 1408.673 kb on - strand, within OLJFJH_06930at 1408.850 kb on + strand, within OLJFJH_06930at 1408.851 kb on - strand, within OLJFJH_06930at 1408.851 kb on - strand, within OLJFJH_06930at 1408.851 kb on - strand, within OLJFJH_06930at 1408.851 kb on - strand, within OLJFJH_06930at 1408.883 kb on + strand, within OLJFJH_06930at 1408.883 kb on + strand, within OLJFJH_06930at 1408.883 kb on + strand, within OLJFJH_06930at 1408.883 kb on + strand, within OLJFJH_06930at 1408.883 kb on + strand, within OLJFJH_06930at 1408.884 kb on - strand, within OLJFJH_06930at 1409.072 kb on - strand, within OLJFJH_06930at 1409.078 kb on - strand, within OLJFJH_06930at 1409.078 kb on - strand, within OLJFJH_06930at 1409.079 kb on + strand, within OLJFJH_06930at 1409.079 kb on + strand, within OLJFJH_06930at 1409.079 kb on + strand, within OLJFJH_06930at 1409.079 kb on + strand, within OLJFJH_06930at 1409.080 kb on - strand, within OLJFJH_06930at 1409.080 kb on - strand, within OLJFJH_06930at 1409.080 kb on - strand, within OLJFJH_06930at 1409.135 kb on - strand, within OLJFJH_06930at 1409.155 kb on + strand, within OLJFJH_06930at 1409.156 kb on - strand, within OLJFJH_06930at 1409.294 kb on - strand, within OLJFJH_06930at 1409.304 kb on + strand, within OLJFJH_06930at 1409.377 kb on + strand, within OLJFJH_06930at 1409.377 kb on + strand, within OLJFJH_06930at 1409.408 kb on + strand, within OLJFJH_06930at 1409.433 kb on - strandat 1409.518 kb on + strandat 1409.540 kb on + strandat 1409.541 kb on - strandat 1409.541 kb on - strandat 1409.541 kb on - strandat 1409.541 kb on - strandat 1409.541 kb on - strandat 1409.573 kb on + strandat 1409.573 kb on + strandat 1409.574 kb on - strandat 1409.687 kb on + strandat 1409.922 kb on + strandat 1409.936 kb on + strandat 1409.936 kb on + strandat 1409.936 kb on + strandat 1409.937 kb on - strandat 1409.937 kb on - strandat 1409.937 kb on - strandat 1409.937 kb on - strandat 1410.144 kb on + strand, within OLJFJH_06935at 1410.348 kb on + strand, within OLJFJH_06935at 1410.488 kb on + strand, within OLJFJH_06935at 1410.489 kb on - strand, within OLJFJH_06935at 1410.489 kb on - strand, within OLJFJH_06935at 1410.492 kb on + strand, within OLJFJH_06935at 1410.493 kb on - strand, within OLJFJH_06935at 1410.493 kb on - strand, within OLJFJH_06935at 1410.507 kb on + strand, within OLJFJH_06935at 1410.507 kb on + strand, within OLJFJH_06935at 1410.507 kb on + strand, within OLJFJH_06935at 1410.508 kb on - strand, within OLJFJH_06935at 1410.559 kb on - strand, within OLJFJH_06935at 1410.561 kb on + strand, within OLJFJH_06935

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,407,520 + -0.4
1,407,520 + -0.6
1,407,520 + -0.6
1,407,520 + -0.2
1,407,520 + -0.1
1,407,520 + +0.2
1,407,520 + -0.4
1,407,520 + -0.2
1,407,520 + +1.9
1,407,521 - -0.5
1,407,521 - -0.3
1,407,521 - -0.1
1,407,521 - -0.4
1,407,521 - -0.6
1,407,521 - -1.6
1,407,521 - -0.4
1,407,522 + +0.3
1,407,522 + -0.0
1,407,522 + -0.8
1,407,522 + -0.4
1,407,522 + -0.6
1,407,522 + -0.5
1,407,522 + -0.4
1,407,522 + -0.1
1,407,522 + -0.4
1,407,522 + +0.4
1,407,522 + -1.3
1,407,522 + -0.2
1,407,522 + +0.3
1,407,523 - -1.6
1,407,523 - -0.6
1,407,523 - -1.5
1,407,523 - -0.9
1,407,523 - -0.4
1,407,523 - +0.4
1,407,523 - -0.4
1,407,523 - -0.1
1,407,523 - -1.3
1,407,523 - -0.2
1,407,523 - -0.5
1,407,535 + -0.1
1,407,536 - +0.5
1,407,623 + OLJFJH_06925 0.17 -0.0
1,407,624 - OLJFJH_06925 0.17 +0.9
1,407,624 - OLJFJH_06925 0.17 -0.7
1,407,652 + OLJFJH_06925 0.22 +0.5
1,407,652 + OLJFJH_06925 0.22 -1.1
1,407,653 - OLJFJH_06925 0.22 -0.5
1,407,722 + OLJFJH_06925 0.34 +0.4
1,407,931 + OLJFJH_06925 0.70 -0.1
1,407,931 + OLJFJH_06925 0.70 -0.4
1,407,931 + OLJFJH_06925 0.70 +0.0
1,407,931 + OLJFJH_06925 0.70 +0.5
1,407,931 + OLJFJH_06925 0.70 -0.1
1,407,932 - OLJFJH_06925 0.70 -1.2
1,407,932 - OLJFJH_06925 0.70 -0.5
1,407,932 - OLJFJH_06925 0.70 -0.1
1,407,932 - OLJFJH_06925 0.70 -0.3
1,407,975 + OLJFJH_06925 0.78 -0.5
1,408,105 + -0.2
1,408,119 + -1.4
1,408,130 - -0.6
1,408,157 + -0.2
1,408,158 - -0.3
1,408,226 - -1.1
1,408,226 - -1.9
1,408,229 + -0.4
1,408,229 + -0.8
1,408,229 + +0.0
1,408,321 + OLJFJH_06930 0.15 +0.1
1,408,325 - OLJFJH_06930 0.15 +0.4
1,408,426 - OLJFJH_06930 0.22 -1.1
1,408,428 + OLJFJH_06930 0.22 -0.1
1,408,501 + OLJFJH_06930 0.27 -1.4
1,408,538 - OLJFJH_06930 0.29 +0.4
1,408,619 - OLJFJH_06930 0.35 +0.9
1,408,673 - OLJFJH_06930 0.39 -0.3
1,408,850 + OLJFJH_06930 0.51 -0.3
1,408,851 - OLJFJH_06930 0.51 +0.4
1,408,851 - OLJFJH_06930 0.51 +0.4
1,408,851 - OLJFJH_06930 0.51 -0.9
1,408,851 - OLJFJH_06930 0.51 -0.2
1,408,883 + OLJFJH_06930 0.53 -0.1
1,408,883 + OLJFJH_06930 0.53 -1.1
1,408,883 + OLJFJH_06930 0.53 -2.1
1,408,883 + OLJFJH_06930 0.53 +0.3
1,408,883 + OLJFJH_06930 0.53 -1.2
1,408,884 - OLJFJH_06930 0.53 -1.2
1,409,072 - OLJFJH_06930 0.66 -0.1
1,409,078 - OLJFJH_06930 0.66 +1.4
1,409,078 - OLJFJH_06930 0.66 -0.2
1,409,079 + OLJFJH_06930 0.66 +0.4
1,409,079 + OLJFJH_06930 0.66 -1.6
1,409,079 + OLJFJH_06930 0.66 +0.5
1,409,079 + OLJFJH_06930 0.66 -0.9
1,409,080 - OLJFJH_06930 0.66 -0.4
1,409,080 - OLJFJH_06930 0.66 -0.4
1,409,080 - OLJFJH_06930 0.66 +0.0
1,409,135 - OLJFJH_06930 0.70 -0.1
1,409,155 + OLJFJH_06930 0.71 -1.9
1,409,156 - OLJFJH_06930 0.71 +0.2
1,409,294 - OLJFJH_06930 0.81 -0.3
1,409,304 + OLJFJH_06930 0.81 -1.1
1,409,377 + OLJFJH_06930 0.86 -1.1
1,409,377 + OLJFJH_06930 0.86 +1.4
1,409,408 + OLJFJH_06930 0.89 -0.8
1,409,433 - -0.9
1,409,518 + -2.5
1,409,540 + +0.3
1,409,541 - -0.1
1,409,541 - -0.1
1,409,541 - -0.1
1,409,541 - -0.2
1,409,541 - -0.6
1,409,573 + -0.2
1,409,573 + +0.1
1,409,574 - +0.5
1,409,687 + +0.3
1,409,922 + -0.2
1,409,936 + -0.3
1,409,936 + -0.0
1,409,936 + +0.2
1,409,937 - -0.4
1,409,937 - +0.2
1,409,937 - +0.4
1,409,937 - -0.3
1,410,144 + OLJFJH_06935 0.13 -0.2
1,410,348 + OLJFJH_06935 0.19 -0.4
1,410,488 + OLJFJH_06935 0.22 +0.3
1,410,489 - OLJFJH_06935 0.22 +0.0
1,410,489 - OLJFJH_06935 0.22 +0.3
1,410,492 + OLJFJH_06935 0.22 +0.1
1,410,493 - OLJFJH_06935 0.22 -0.3
1,410,493 - OLJFJH_06935 0.22 -0.8
1,410,507 + OLJFJH_06935 0.23 -0.2
1,410,507 + OLJFJH_06935 0.23 +0.0
1,410,507 + OLJFJH_06935 0.23 -0.1
1,410,508 - OLJFJH_06935 0.23 +1.3
1,410,559 - OLJFJH_06935 0.24 +0.1
1,410,561 + OLJFJH_06935 0.24 +0.4

Or see this region's nucleotide sequence