Strain Fitness in Erwinia amylovora T8 around OLJFJH_06855

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06845 and OLJFJH_06850 are separated by 522 nucleotidesOLJFJH_06850 and OLJFJH_06855 are separated by 25 nucleotidesOLJFJH_06855 and OLJFJH_06860 are separated by 306 nucleotides OLJFJH_06845: OLJFJH_06845 - Membrane protein, at 1,392,150 to 1,392,458 _06845 OLJFJH_06850: OLJFJH_06850 - DNA-binding transcriptional regulator Fis, at 1,392,981 to 1,393,277 _06850 OLJFJH_06855: OLJFJH_06855 - tRNA dihydrouridine synthase DusB, at 1,393,303 to 1,394,268 _06855 OLJFJH_06860: OLJFJH_06860 - 50S ribosomal protein L11 methyltransferase, at 1,394,575 to 1,395,456 _06860 Position (kb) 1393 1394 1395Strain fitness (log2 ratio) -3 -2 -1 0 1at 1392.318 kb on - strand, within OLJFJH_06845at 1392.340 kb on + strand, within OLJFJH_06845at 1392.371 kb on + strand, within OLJFJH_06845at 1392.386 kb on + strand, within OLJFJH_06845at 1392.411 kb on - strand, within OLJFJH_06845at 1392.457 kb on - strandat 1392.457 kb on - strandat 1392.457 kb on - strandat 1392.470 kb on - strandat 1392.488 kb on + strandat 1392.488 kb on + strandat 1392.488 kb on + strandat 1392.489 kb on - strandat 1392.489 kb on - strandat 1392.519 kb on + strandat 1392.524 kb on - strandat 1392.669 kb on + strandat 1392.669 kb on + strandat 1392.669 kb on + strandat 1392.670 kb on - strandat 1392.674 kb on - strandat 1392.691 kb on + strandat 1392.692 kb on - strandat 1392.707 kb on + strandat 1392.711 kb on + strandat 1392.712 kb on - strandat 1392.773 kb on + strandat 1392.775 kb on + strandat 1392.776 kb on - strandat 1392.776 kb on - strandat 1392.799 kb on + strandat 1392.842 kb on + strandat 1392.858 kb on - strandat 1392.885 kb on + strandat 1392.886 kb on + strandat 1392.887 kb on - strandat 1392.887 kb on - strandat 1392.890 kb on + strandat 1392.891 kb on - strandat 1392.920 kb on + strandat 1392.946 kb on - strandat 1392.969 kb on - strandat 1393.073 kb on - strand, within OLJFJH_06850at 1393.117 kb on - strand, within OLJFJH_06850at 1393.278 kb on - strandat 1393.323 kb on - strandat 1393.323 kb on - strandat 1393.413 kb on - strand, within OLJFJH_06855at 1393.437 kb on + strand, within OLJFJH_06855at 1393.550 kb on + strand, within OLJFJH_06855at 1393.601 kb on - strand, within OLJFJH_06855at 1393.601 kb on - strand, within OLJFJH_06855at 1393.626 kb on - strand, within OLJFJH_06855at 1393.626 kb on - strand, within OLJFJH_06855at 1393.702 kb on - strand, within OLJFJH_06855at 1393.702 kb on - strand, within OLJFJH_06855at 1393.722 kb on - strand, within OLJFJH_06855at 1393.948 kb on - strand, within OLJFJH_06855at 1394.093 kb on - strand, within OLJFJH_06855at 1394.098 kb on - strand, within OLJFJH_06855at 1394.098 kb on - strand, within OLJFJH_06855at 1394.261 kb on - strandat 1394.307 kb on - strandat 1394.308 kb on + strandat 1394.308 kb on + strandat 1394.309 kb on - strandat 1394.312 kb on - strandat 1394.489 kb on - strandat 1394.722 kb on + strand, within OLJFJH_06860at 1394.723 kb on - strand, within OLJFJH_06860at 1394.749 kb on + strand, within OLJFJH_06860at 1394.749 kb on + strand, within OLJFJH_06860at 1394.750 kb on - strand, within OLJFJH_06860at 1394.972 kb on - strand, within OLJFJH_06860

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,392,318 - OLJFJH_06845 0.54 -0.4
1,392,340 + OLJFJH_06845 0.61 -0.1
1,392,371 + OLJFJH_06845 0.72 -0.2
1,392,386 + OLJFJH_06845 0.76 +0.1
1,392,411 - OLJFJH_06845 0.84 +0.1
1,392,457 - +0.1
1,392,457 - +0.3
1,392,457 - -0.5
1,392,470 - -0.1
1,392,488 + +0.2
1,392,488 + -0.5
1,392,488 + +0.4
1,392,489 - +0.1
1,392,489 - -0.1
1,392,519 + +0.0
1,392,524 - +0.9
1,392,669 + +0.5
1,392,669 + +0.3
1,392,669 + +0.3
1,392,670 - -0.4
1,392,674 - -0.2
1,392,691 + +1.1
1,392,692 - +0.1
1,392,707 + +0.3
1,392,711 + -0.1
1,392,712 - -0.3
1,392,773 + -0.1
1,392,775 + +0.3
1,392,776 - -0.5
1,392,776 - -0.2
1,392,799 + +0.2
1,392,842 + -1.6
1,392,858 - +0.5
1,392,885 + +0.4
1,392,886 + -0.7
1,392,887 - +0.4
1,392,887 - +0.6
1,392,890 + -0.1
1,392,891 - +0.0
1,392,920 + +0.9
1,392,946 - -0.8
1,392,969 - -0.1
1,393,073 - OLJFJH_06850 0.31 +0.9
1,393,117 - OLJFJH_06850 0.46 -1.4
1,393,278 - -0.6
1,393,323 - +0.9
1,393,323 - -1.8
1,393,413 - OLJFJH_06855 0.11 +1.2
1,393,437 + OLJFJH_06855 0.14 -0.1
1,393,550 + OLJFJH_06855 0.26 +0.9
1,393,601 - OLJFJH_06855 0.31 -1.5
1,393,601 - OLJFJH_06855 0.31 -0.6
1,393,626 - OLJFJH_06855 0.33 -1.5
1,393,626 - OLJFJH_06855 0.33 -0.8
1,393,702 - OLJFJH_06855 0.41 -1.3
1,393,702 - OLJFJH_06855 0.41 -1.3
1,393,722 - OLJFJH_06855 0.43 -0.6
1,393,948 - OLJFJH_06855 0.67 -0.3
1,394,093 - OLJFJH_06855 0.82 -0.4
1,394,098 - OLJFJH_06855 0.82 -0.0
1,394,098 - OLJFJH_06855 0.82 -0.5
1,394,261 - -1.2
1,394,307 - -0.1
1,394,308 + -0.1
1,394,308 + +0.4
1,394,309 - -2.9
1,394,312 - -0.6
1,394,489 - -0.2
1,394,722 + OLJFJH_06860 0.17 +0.3
1,394,723 - OLJFJH_06860 0.17 +0.0
1,394,749 + OLJFJH_06860 0.20 +0.1
1,394,749 + OLJFJH_06860 0.20 +0.2
1,394,750 - OLJFJH_06860 0.20 -0.3
1,394,972 - OLJFJH_06860 0.45 -0.1

Or see this region's nucleotide sequence