Strain Fitness in Erwinia amylovora T8 around OLJFJH_06735

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06730 and OLJFJH_06735 are separated by 775 nucleotidesOLJFJH_06735 and OLJFJH_06740 overlap by 4 nucleotides OLJFJH_06730: OLJFJH_06730 - protease, at 1,366,917 to 1,367,858 _06730 OLJFJH_06735: OLJFJH_06735 - thiamine phosphate synthase, at 1,368,634 to 1,369,278 _06735 OLJFJH_06740: OLJFJH_06740 - phosphomethylpyrimidine synthase ThiC, at 1,369,275 to 1,371,209 _06740 Position (kb) 1368 1369 1370Strain fitness (log2 ratio) -2 -1 0 1 2at 1367.661 kb on - strand, within OLJFJH_06730at 1367.666 kb on - strand, within OLJFJH_06730at 1367.769 kb on - strandat 1367.836 kb on - strandat 1367.953 kb on - strandat 1367.957 kb on - strandat 1368.295 kb on - strandat 1368.438 kb on - strandat 1368.492 kb on + strandat 1368.492 kb on + strandat 1368.492 kb on + strandat 1368.492 kb on + strandat 1368.493 kb on - strandat 1368.493 kb on - strandat 1368.494 kb on + strandat 1368.494 kb on + strandat 1368.494 kb on + strandat 1368.494 kb on + strandat 1368.494 kb on + strandat 1368.494 kb on + strandat 1368.494 kb on + strandat 1368.494 kb on + strandat 1368.495 kb on - strandat 1368.495 kb on - strandat 1368.495 kb on - strandat 1368.495 kb on - strandat 1368.495 kb on - strandat 1368.495 kb on - strandat 1368.496 kb on + strandat 1368.496 kb on + strandat 1368.496 kb on + strandat 1368.496 kb on + strandat 1368.497 kb on - strandat 1368.497 kb on - strandat 1368.497 kb on - strandat 1368.497 kb on - strandat 1368.581 kb on + strandat 1368.581 kb on + strandat 1368.581 kb on + strandat 1368.581 kb on + strandat 1368.581 kb on + strandat 1368.581 kb on + strandat 1368.581 kb on + strandat 1368.582 kb on - strandat 1368.582 kb on - strandat 1368.733 kb on - strand, within OLJFJH_06735at 1368.798 kb on + strand, within OLJFJH_06735at 1368.799 kb on - strand, within OLJFJH_06735at 1368.820 kb on + strand, within OLJFJH_06735at 1368.821 kb on - strand, within OLJFJH_06735at 1368.821 kb on - strand, within OLJFJH_06735at 1368.821 kb on - strand, within OLJFJH_06735at 1368.823 kb on - strand, within OLJFJH_06735at 1368.864 kb on + strand, within OLJFJH_06735at 1368.887 kb on - strand, within OLJFJH_06735at 1368.904 kb on - strand, within OLJFJH_06735at 1368.904 kb on - strand, within OLJFJH_06735at 1368.905 kb on + strand, within OLJFJH_06735at 1368.905 kb on + strand, within OLJFJH_06735at 1368.905 kb on + strand, within OLJFJH_06735at 1368.906 kb on - strand, within OLJFJH_06735at 1368.906 kb on - strand, within OLJFJH_06735at 1368.906 kb on - strand, within OLJFJH_06735at 1368.906 kb on - strand, within OLJFJH_06735at 1368.983 kb on + strand, within OLJFJH_06735at 1368.983 kb on + strand, within OLJFJH_06735at 1368.984 kb on - strand, within OLJFJH_06735at 1369.038 kb on - strand, within OLJFJH_06735at 1369.077 kb on + strand, within OLJFJH_06735at 1369.165 kb on + strand, within OLJFJH_06735at 1369.278 kb on + strandat 1369.544 kb on + strand, within OLJFJH_06740at 1369.545 kb on - strand, within OLJFJH_06740at 1369.658 kb on + strand, within OLJFJH_06740at 1369.721 kb on - strand, within OLJFJH_06740at 1369.868 kb on + strand, within OLJFJH_06740at 1369.869 kb on - strand, within OLJFJH_06740at 1370.087 kb on - strand, within OLJFJH_06740at 1370.186 kb on - strand, within OLJFJH_06740at 1370.186 kb on - strand, within OLJFJH_06740at 1370.186 kb on - strand, within OLJFJH_06740at 1370.218 kb on + strand, within OLJFJH_06740at 1370.219 kb on - strand, within OLJFJH_06740at 1370.219 kb on - strand, within OLJFJH_06740

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,367,661 - OLJFJH_06730 0.79 +0.0
1,367,666 - OLJFJH_06730 0.80 +0.1
1,367,769 - -0.2
1,367,836 - -0.0
1,367,953 - +0.2
1,367,957 - -0.2
1,368,295 - -0.3
1,368,438 - -0.1
1,368,492 + -0.3
1,368,492 + +0.2
1,368,492 + -0.2
1,368,492 + -0.1
1,368,493 - +0.4
1,368,493 - +0.5
1,368,494 + +0.1
1,368,494 + -0.6
1,368,494 + -0.0
1,368,494 + +0.1
1,368,494 + -0.4
1,368,494 + +0.5
1,368,494 + -0.4
1,368,494 + +0.2
1,368,495 - +0.5
1,368,495 - -0.4
1,368,495 - -0.4
1,368,495 - +0.1
1,368,495 - -0.1
1,368,495 - +0.9
1,368,496 + +0.5
1,368,496 + +0.8
1,368,496 + -0.0
1,368,496 + -0.1
1,368,497 - +2.5
1,368,497 - +0.0
1,368,497 - -0.2
1,368,497 - +0.2
1,368,581 + +0.3
1,368,581 + +1.6
1,368,581 + -0.5
1,368,581 + +0.2
1,368,581 + +0.3
1,368,581 + -0.2
1,368,581 + -0.1
1,368,582 - -0.3
1,368,582 - -0.4
1,368,733 - OLJFJH_06735 0.15 -1.8
1,368,798 + OLJFJH_06735 0.25 -1.7
1,368,799 - OLJFJH_06735 0.26 -1.3
1,368,820 + OLJFJH_06735 0.29 +0.9
1,368,821 - OLJFJH_06735 0.29 -0.6
1,368,821 - OLJFJH_06735 0.29 -1.8
1,368,821 - OLJFJH_06735 0.29 -1.9
1,368,823 - OLJFJH_06735 0.29 -1.2
1,368,864 + OLJFJH_06735 0.36 -2.0
1,368,887 - OLJFJH_06735 0.39 -1.4
1,368,904 - OLJFJH_06735 0.42 -1.1
1,368,904 - OLJFJH_06735 0.42 -0.9
1,368,905 + OLJFJH_06735 0.42 -2.6
1,368,905 + OLJFJH_06735 0.42 -2.6
1,368,905 + OLJFJH_06735 0.42 +0.9
1,368,906 - OLJFJH_06735 0.42 -1.1
1,368,906 - OLJFJH_06735 0.42 -1.2
1,368,906 - OLJFJH_06735 0.42 -2.1
1,368,906 - OLJFJH_06735 0.42 -2.1
1,368,983 + OLJFJH_06735 0.54 -2.6
1,368,983 + OLJFJH_06735 0.54 -0.4
1,368,984 - OLJFJH_06735 0.54 -1.3
1,369,038 - OLJFJH_06735 0.63 -2.3
1,369,077 + OLJFJH_06735 0.69 -2.4
1,369,165 + OLJFJH_06735 0.82 -1.6
1,369,278 + -2.0
1,369,544 + OLJFJH_06740 0.14 -2.5
1,369,545 - OLJFJH_06740 0.14 -0.1
1,369,658 + OLJFJH_06740 0.20 -0.8
1,369,721 - OLJFJH_06740 0.23 -0.9
1,369,868 + OLJFJH_06740 0.31 -2.5
1,369,869 - OLJFJH_06740 0.31 -1.2
1,370,087 - OLJFJH_06740 0.42 -1.8
1,370,186 - OLJFJH_06740 0.47 -0.1
1,370,186 - OLJFJH_06740 0.47 -0.6
1,370,186 - OLJFJH_06740 0.47 +0.8
1,370,218 + OLJFJH_06740 0.49 -1.1
1,370,219 - OLJFJH_06740 0.49 +0.1
1,370,219 - OLJFJH_06740 0.49 -2.6

Or see this region's nucleotide sequence