Strain Fitness in Erwinia amylovora T8 around OLJFJH_06545

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_06540 and OLJFJH_06545 are separated by 44 nucleotidesOLJFJH_06545 and OLJFJH_06550 are separated by 104 nucleotides OLJFJH_06540: OLJFJH_06540 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 1,323,815 to 1,325,299 _06540 OLJFJH_06545: OLJFJH_06545 - NAD(P)H-flavin reductase, at 1,325,344 to 1,326,045 _06545 OLJFJH_06550: OLJFJH_06550 - acetyl-CoA C-acyltransferase FadA, at 1,326,150 to 1,327,313 _06550 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -2 -1 0 1at 1325.268 kb on + strandat 1325.285 kb on - strandat 1325.362 kb on - strandat 1325.584 kb on - strand, within OLJFJH_06545at 1325.609 kb on + strand, within OLJFJH_06545at 1325.610 kb on - strand, within OLJFJH_06545at 1325.610 kb on - strand, within OLJFJH_06545at 1325.610 kb on - strand, within OLJFJH_06545at 1325.613 kb on + strand, within OLJFJH_06545at 1325.613 kb on + strand, within OLJFJH_06545at 1325.614 kb on - strand, within OLJFJH_06545at 1325.614 kb on - strand, within OLJFJH_06545at 1325.692 kb on + strand, within OLJFJH_06545at 1325.693 kb on - strand, within OLJFJH_06545at 1325.782 kb on + strand, within OLJFJH_06545at 1325.783 kb on - strand, within OLJFJH_06545at 1325.868 kb on + strand, within OLJFJH_06545at 1325.934 kb on + strand, within OLJFJH_06545at 1325.935 kb on - strand, within OLJFJH_06545at 1325.935 kb on - strand, within OLJFJH_06545at 1325.938 kb on + strand, within OLJFJH_06545at 1325.938 kb on + strand, within OLJFJH_06545at 1325.938 kb on + strand, within OLJFJH_06545at 1326.039 kb on + strandat 1326.040 kb on - strandat 1326.040 kb on - strandat 1326.076 kb on + strandat 1326.077 kb on - strandat 1326.077 kb on - strandat 1326.143 kb on + strandat 1326.143 kb on + strandat 1326.151 kb on + strandat 1326.237 kb on - strandat 1326.356 kb on + strand, within OLJFJH_06550at 1326.420 kb on - strand, within OLJFJH_06550at 1326.422 kb on + strand, within OLJFJH_06550at 1326.422 kb on + strand, within OLJFJH_06550at 1326.476 kb on + strand, within OLJFJH_06550at 1326.565 kb on - strand, within OLJFJH_06550at 1326.953 kb on + strand, within OLJFJH_06550at 1326.980 kb on + strand, within OLJFJH_06550at 1326.981 kb on - strand, within OLJFJH_06550at 1326.998 kb on + strand, within OLJFJH_06550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
remove
1,325,268 + +1.2
1,325,285 - +0.3
1,325,362 - -1.4
1,325,584 - OLJFJH_06545 0.34 -0.6
1,325,609 + OLJFJH_06545 0.38 -0.5
1,325,610 - OLJFJH_06545 0.38 -0.5
1,325,610 - OLJFJH_06545 0.38 -0.8
1,325,610 - OLJFJH_06545 0.38 -0.9
1,325,613 + OLJFJH_06545 0.38 +0.6
1,325,613 + OLJFJH_06545 0.38 -0.5
1,325,614 - OLJFJH_06545 0.38 -0.6
1,325,614 - OLJFJH_06545 0.38 +0.5
1,325,692 + OLJFJH_06545 0.50 +0.3
1,325,693 - OLJFJH_06545 0.50 -0.1
1,325,782 + OLJFJH_06545 0.62 -0.6
1,325,783 - OLJFJH_06545 0.63 -1.9
1,325,868 + OLJFJH_06545 0.75 -0.9
1,325,934 + OLJFJH_06545 0.84 -0.1
1,325,935 - OLJFJH_06545 0.84 -0.7
1,325,935 - OLJFJH_06545 0.84 +0.5
1,325,938 + OLJFJH_06545 0.85 -1.6
1,325,938 + OLJFJH_06545 0.85 -0.6
1,325,938 + OLJFJH_06545 0.85 -0.4
1,326,039 + -0.6
1,326,040 - -0.2
1,326,040 - -0.3
1,326,076 + -0.2
1,326,077 - +0.2
1,326,077 - -0.5
1,326,143 + +0.0
1,326,143 + +0.1
1,326,151 + +0.1
1,326,237 - -0.1
1,326,356 + OLJFJH_06550 0.18 -0.3
1,326,420 - OLJFJH_06550 0.23 -0.5
1,326,422 + OLJFJH_06550 0.23 +0.2
1,326,422 + OLJFJH_06550 0.23 +0.5
1,326,476 + OLJFJH_06550 0.28 -0.1
1,326,565 - OLJFJH_06550 0.36 +0.4
1,326,953 + OLJFJH_06550 0.69 -1.2
1,326,980 + OLJFJH_06550 0.71 -0.8
1,326,981 - OLJFJH_06550 0.71 +0.3
1,326,998 + OLJFJH_06550 0.73 +0.2

Or see this region's nucleotide sequence