Strain Fitness in Erwinia amylovora T8 around OLJFJH_06415

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06405 and OLJFJH_06410 overlap by 4 nucleotidesOLJFJH_06410 and OLJFJH_06415 overlap by 4 nucleotidesOLJFJH_06415 and OLJFJH_06420 overlap by 1 nucleotidesOLJFJH_06420 and OLJFJH_06425 are separated by 48 nucleotides OLJFJH_06405: OLJFJH_06405 - diaminopimelate epimerase, at 1,295,214 to 1,296,038 _06405 OLJFJH_06410: OLJFJH_06410 - DUF484 domain-containing protein, at 1,296,035 to 1,296,742 _06410 OLJFJH_06415: OLJFJH_06415 - tyrosine recombinase XerC, at 1,296,739 to 1,297,647 _06415 OLJFJH_06420: OLJFJH_06420 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 1,297,647 to 1,298,363 _06420 OLJFJH_06425: OLJFJH_06425 - DNA helicase II, at 1,298,412 to 1,300,583 _06425 Position (kb) 1296 1297 1298Strain fitness (log2 ratio) -3 -2 -1 0 1at 1296.131 kb on - strand, within OLJFJH_06410at 1296.136 kb on + strand, within OLJFJH_06410at 1296.136 kb on + strand, within OLJFJH_06410at 1296.349 kb on + strand, within OLJFJH_06410at 1296.349 kb on + strand, within OLJFJH_06410at 1296.349 kb on + strand, within OLJFJH_06410at 1296.350 kb on - strand, within OLJFJH_06410at 1296.350 kb on - strand, within OLJFJH_06410at 1296.350 kb on - strand, within OLJFJH_06410at 1296.509 kb on - strand, within OLJFJH_06410at 1296.525 kb on + strand, within OLJFJH_06410at 1296.526 kb on - strand, within OLJFJH_06410at 1296.569 kb on - strand, within OLJFJH_06410at 1296.684 kb on + strandat 1296.684 kb on + strandat 1296.875 kb on + strand, within OLJFJH_06415at 1296.876 kb on - strand, within OLJFJH_06415at 1296.987 kb on - strand, within OLJFJH_06415at 1297.174 kb on + strand, within OLJFJH_06415at 1297.174 kb on + strand, within OLJFJH_06415at 1297.174 kb on + strand, within OLJFJH_06415at 1297.175 kb on - strand, within OLJFJH_06415at 1297.175 kb on - strand, within OLJFJH_06415at 1297.247 kb on + strand, within OLJFJH_06415at 1297.248 kb on - strand, within OLJFJH_06415at 1297.269 kb on + strand, within OLJFJH_06415at 1297.269 kb on + strand, within OLJFJH_06415at 1297.269 kb on + strand, within OLJFJH_06415at 1297.456 kb on - strand, within OLJFJH_06415at 1297.494 kb on + strand, within OLJFJH_06415at 1297.494 kb on + strand, within OLJFJH_06415at 1297.494 kb on + strand, within OLJFJH_06415at 1297.494 kb on + strand, within OLJFJH_06415at 1297.494 kb on + strand, within OLJFJH_06415at 1297.494 kb on + strand, within OLJFJH_06415at 1297.494 kb on + strand, within OLJFJH_06415at 1297.495 kb on - strand, within OLJFJH_06415at 1297.495 kb on - strand, within OLJFJH_06415at 1297.495 kb on - strand, within OLJFJH_06415at 1297.495 kb on - strand, within OLJFJH_06415at 1297.570 kb on + strandat 1297.570 kb on + strandat 1297.570 kb on + strandat 1297.571 kb on - strandat 1297.571 kb on - strandat 1297.607 kb on - strandat 1297.607 kb on - strandat 1297.657 kb on - strandat 1297.710 kb on + strandat 1297.710 kb on + strandat 1297.710 kb on + strandat 1297.711 kb on - strandat 1297.784 kb on - strand, within OLJFJH_06420at 1297.793 kb on + strand, within OLJFJH_06420at 1297.895 kb on + strand, within OLJFJH_06420at 1297.896 kb on - strand, within OLJFJH_06420at 1298.030 kb on + strand, within OLJFJH_06420at 1298.030 kb on + strand, within OLJFJH_06420at 1298.031 kb on - strand, within OLJFJH_06420at 1298.031 kb on - strand, within OLJFJH_06420at 1298.092 kb on - strand, within OLJFJH_06420at 1298.103 kb on - strand, within OLJFJH_06420at 1298.103 kb on - strand, within OLJFJH_06420at 1298.104 kb on + strand, within OLJFJH_06420at 1298.107 kb on + strand, within OLJFJH_06420at 1298.108 kb on - strand, within OLJFJH_06420at 1298.108 kb on - strand, within OLJFJH_06420at 1298.140 kb on - strand, within OLJFJH_06420at 1298.151 kb on + strand, within OLJFJH_06420at 1298.151 kb on + strand, within OLJFJH_06420at 1298.151 kb on + strand, within OLJFJH_06420at 1298.151 kb on + strand, within OLJFJH_06420at 1298.151 kb on + strand, within OLJFJH_06420at 1298.151 kb on + strand, within OLJFJH_06420at 1298.151 kb on + strand, within OLJFJH_06420at 1298.152 kb on - strand, within OLJFJH_06420at 1298.239 kb on + strand, within OLJFJH_06420at 1298.239 kb on + strand, within OLJFJH_06420at 1298.239 kb on + strand, within OLJFJH_06420at 1298.239 kb on + strand, within OLJFJH_06420at 1298.359 kb on + strandat 1298.360 kb on - strandat 1298.361 kb on + strandat 1298.362 kb on - strandat 1298.362 kb on - strandat 1298.421 kb on - strandat 1298.522 kb on + strandat 1298.523 kb on - strandat 1298.567 kb on - strandat 1298.639 kb on + strand, within OLJFJH_06425at 1298.640 kb on - strand, within OLJFJH_06425

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,296,131 - OLJFJH_06410 0.14 -1.4
1,296,136 + OLJFJH_06410 0.14 -0.1
1,296,136 + OLJFJH_06410 0.14 +1.5
1,296,349 + OLJFJH_06410 0.44 -0.4
1,296,349 + OLJFJH_06410 0.44 -0.1
1,296,349 + OLJFJH_06410 0.44 -0.2
1,296,350 - OLJFJH_06410 0.44 +0.2
1,296,350 - OLJFJH_06410 0.44 -0.1
1,296,350 - OLJFJH_06410 0.44 -1.6
1,296,509 - OLJFJH_06410 0.67 -1.4
1,296,525 + OLJFJH_06410 0.69 +0.1
1,296,526 - OLJFJH_06410 0.69 -0.6
1,296,569 - OLJFJH_06410 0.75 +0.2
1,296,684 + -0.7
1,296,684 + -0.1
1,296,875 + OLJFJH_06415 0.15 -1.1
1,296,876 - OLJFJH_06415 0.15 -1.4
1,296,987 - OLJFJH_06415 0.27 -1.1
1,297,174 + OLJFJH_06415 0.48 -1.4
1,297,174 + OLJFJH_06415 0.48 -0.1
1,297,174 + OLJFJH_06415 0.48 +0.9
1,297,175 - OLJFJH_06415 0.48 -1.6
1,297,175 - OLJFJH_06415 0.48 -3.2
1,297,247 + OLJFJH_06415 0.56 -0.9
1,297,248 - OLJFJH_06415 0.56 +0.9
1,297,269 + OLJFJH_06415 0.58 +1.6
1,297,269 + OLJFJH_06415 0.58 -1.4
1,297,269 + OLJFJH_06415 0.58 -1.9
1,297,456 - OLJFJH_06415 0.79 -1.1
1,297,494 + OLJFJH_06415 0.83 -0.8
1,297,494 + OLJFJH_06415 0.83 +0.5
1,297,494 + OLJFJH_06415 0.83 +0.5
1,297,494 + OLJFJH_06415 0.83 -1.0
1,297,494 + OLJFJH_06415 0.83 -0.1
1,297,494 + OLJFJH_06415 0.83 -0.9
1,297,494 + OLJFJH_06415 0.83 -0.6
1,297,495 - OLJFJH_06415 0.83 -0.3
1,297,495 - OLJFJH_06415 0.83 -0.2
1,297,495 - OLJFJH_06415 0.83 -0.6
1,297,495 - OLJFJH_06415 0.83 +0.9
1,297,570 + -0.6
1,297,570 + +0.4
1,297,570 + +0.1
1,297,571 - -1.9
1,297,571 - +0.7
1,297,607 - -0.1
1,297,607 - -1.2
1,297,657 - -0.1
1,297,710 + -0.1
1,297,710 + -0.1
1,297,710 + +0.3
1,297,711 - -0.8
1,297,784 - OLJFJH_06420 0.19 +0.4
1,297,793 + OLJFJH_06420 0.20 -0.2
1,297,895 + OLJFJH_06420 0.35 -0.6
1,297,896 - OLJFJH_06420 0.35 -0.1
1,298,030 + OLJFJH_06420 0.53 -0.3
1,298,030 + OLJFJH_06420 0.53 +0.1
1,298,031 - OLJFJH_06420 0.54 +0.5
1,298,031 - OLJFJH_06420 0.54 +1.5
1,298,092 - OLJFJH_06420 0.62 -0.6
1,298,103 - OLJFJH_06420 0.64 +0.5
1,298,103 - OLJFJH_06420 0.64 -0.2
1,298,104 + OLJFJH_06420 0.64 +0.0
1,298,107 + OLJFJH_06420 0.64 -0.3
1,298,108 - OLJFJH_06420 0.64 -0.1
1,298,108 - OLJFJH_06420 0.64 +0.5
1,298,140 - OLJFJH_06420 0.69 +0.1
1,298,151 + OLJFJH_06420 0.70 -0.1
1,298,151 + OLJFJH_06420 0.70 -1.5
1,298,151 + OLJFJH_06420 0.70 -0.1
1,298,151 + OLJFJH_06420 0.70 +0.1
1,298,151 + OLJFJH_06420 0.70 +0.2
1,298,151 + OLJFJH_06420 0.70 +0.2
1,298,151 + OLJFJH_06420 0.70 +0.5
1,298,152 - OLJFJH_06420 0.70 +0.4
1,298,239 + OLJFJH_06420 0.83 +0.0
1,298,239 + OLJFJH_06420 0.83 -0.1
1,298,239 + OLJFJH_06420 0.83 -0.8
1,298,239 + OLJFJH_06420 0.83 -0.9
1,298,359 + -0.6
1,298,360 - +0.1
1,298,361 + +0.1
1,298,362 - +0.9
1,298,362 - -0.2
1,298,421 - +0.3
1,298,522 + -0.2
1,298,523 - +0.1
1,298,567 - -2.6
1,298,639 + OLJFJH_06425 0.10 -1.3
1,298,640 - OLJFJH_06425 0.10 -0.2

Or see this region's nucleotide sequence