Strain Fitness in Erwinia amylovora T8 around OLJFJH_06320

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06315 and OLJFJH_06320 are separated by 1 nucleotidesOLJFJH_06320 and OLJFJH_06325 overlap by 4 nucleotides OLJFJH_06315: OLJFJH_06315 - dTDP-4-amino-4 6-dideoxygalactose transaminase, at 1,279,674 to 1,280,804 _06315 OLJFJH_06320: OLJFJH_06320 - lipid III flippase WzxE, at 1,280,806 to 1,282,056 _06320 OLJFJH_06325: OLJFJH_06325 - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 1,282,053 to 1,283,129 _06325 Position (kb) 1280 1281 1282 1283Strain fitness (log2 ratio) -2 -1 0 1 2at 1279.814 kb on + strand, within OLJFJH_06315at 1279.898 kb on + strand, within OLJFJH_06315at 1279.908 kb on + strand, within OLJFJH_06315at 1279.908 kb on + strand, within OLJFJH_06315at 1279.909 kb on - strand, within OLJFJH_06315at 1279.911 kb on - strand, within OLJFJH_06315at 1279.940 kb on - strand, within OLJFJH_06315at 1280.154 kb on + strand, within OLJFJH_06315at 1280.155 kb on - strand, within OLJFJH_06315at 1280.220 kb on + strand, within OLJFJH_06315at 1280.220 kb on + strand, within OLJFJH_06315at 1280.221 kb on - strand, within OLJFJH_06315at 1280.222 kb on + strand, within OLJFJH_06315at 1280.339 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.344 kb on - strand, within OLJFJH_06315at 1280.344 kb on - strand, within OLJFJH_06315at 1280.370 kb on + strand, within OLJFJH_06315at 1280.463 kb on + strand, within OLJFJH_06315at 1280.464 kb on - strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.635 kb on - strand, within OLJFJH_06315at 1280.635 kb on - strand, within OLJFJH_06315at 1280.635 kb on - strand, within OLJFJH_06315at 1280.742 kb on + strandat 1280.788 kb on + strandat 1280.788 kb on + strandat 1280.789 kb on - strandat 1280.805 kb on + strandat 1280.805 kb on + strandat 1280.806 kb on - strandat 1280.806 kb on - strandat 1280.806 kb on - strandat 1280.806 kb on - strandat 1280.994 kb on + strand, within OLJFJH_06320at 1280.994 kb on + strand, within OLJFJH_06320at 1280.998 kb on + strand, within OLJFJH_06320at 1280.999 kb on - strand, within OLJFJH_06320at 1280.999 kb on - strand, within OLJFJH_06320at 1280.999 kb on - strand, within OLJFJH_06320at 1281.011 kb on - strand, within OLJFJH_06320at 1281.095 kb on + strand, within OLJFJH_06320at 1281.095 kb on + strand, within OLJFJH_06320at 1281.465 kb on + strand, within OLJFJH_06320at 1281.557 kb on + strand, within OLJFJH_06320at 1281.558 kb on - strand, within OLJFJH_06320at 1281.606 kb on + strand, within OLJFJH_06320at 1281.606 kb on + strand, within OLJFJH_06320at 1281.661 kb on - strand, within OLJFJH_06320at 1281.673 kb on - strand, within OLJFJH_06320at 1281.673 kb on - strand, within OLJFJH_06320at 1281.848 kb on - strand, within OLJFJH_06320at 1281.892 kb on + strand, within OLJFJH_06320at 1281.928 kb on - strand, within OLJFJH_06320at 1281.985 kb on + strandat 1281.985 kb on + strandat 1281.986 kb on - strandat 1281.986 kb on - strandat 1281.986 kb on - strandat 1281.986 kb on - strandat 1281.986 kb on - strandat 1281.986 kb on - strandat 1281.987 kb on + strandat 1281.988 kb on - strandat 1281.997 kb on + strandat 1281.997 kb on + strandat 1282.032 kb on + strandat 1282.033 kb on - strandat 1282.033 kb on - strandat 1282.039 kb on + strandat 1282.044 kb on + strandat 1282.045 kb on - strandat 1282.052 kb on + strandat 1282.052 kb on + strandat 1282.053 kb on - strandat 1282.053 kb on - strandat 1282.053 kb on - strandat 1282.053 kb on - strandat 1282.063 kb on + strandat 1282.064 kb on - strandat 1282.064 kb on - strandat 1282.097 kb on + strandat 1282.291 kb on + strand, within OLJFJH_06325at 1282.379 kb on + strand, within OLJFJH_06325at 1282.380 kb on - strand, within OLJFJH_06325at 1282.380 kb on - strand, within OLJFJH_06325at 1282.398 kb on + strand, within OLJFJH_06325at 1282.399 kb on - strand, within OLJFJH_06325at 1282.434 kb on + strand, within OLJFJH_06325at 1282.434 kb on + strand, within OLJFJH_06325at 1282.538 kb on - strand, within OLJFJH_06325at 1282.538 kb on - strand, within OLJFJH_06325at 1282.538 kb on - strand, within OLJFJH_06325at 1282.644 kb on - strand, within OLJFJH_06325at 1282.719 kb on - strand, within OLJFJH_06325at 1282.722 kb on - strand, within OLJFJH_06325at 1282.731 kb on + strand, within OLJFJH_06325at 1282.731 kb on + strand, within OLJFJH_06325at 1282.732 kb on - strand, within OLJFJH_06325at 1282.732 kb on - strand, within OLJFJH_06325at 1282.732 kb on - strand, within OLJFJH_06325at 1282.732 kb on - strand, within OLJFJH_06325at 1282.851 kb on + strand, within OLJFJH_06325at 1282.851 kb on + strand, within OLJFJH_06325at 1282.851 kb on + strand, within OLJFJH_06325at 1282.852 kb on - strand, within OLJFJH_06325at 1282.921 kb on + strand, within OLJFJH_06325

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,279,814 + OLJFJH_06315 0.12 -0.7
1,279,898 + OLJFJH_06315 0.20 -2.5
1,279,908 + OLJFJH_06315 0.21 +0.1
1,279,908 + OLJFJH_06315 0.21 +1.9
1,279,909 - OLJFJH_06315 0.21 -0.6
1,279,911 - OLJFJH_06315 0.21 -0.7
1,279,940 - OLJFJH_06315 0.24 -0.5
1,280,154 + OLJFJH_06315 0.42 +0.2
1,280,155 - OLJFJH_06315 0.43 -0.1
1,280,220 + OLJFJH_06315 0.48 +0.3
1,280,220 + OLJFJH_06315 0.48 -1.3
1,280,221 - OLJFJH_06315 0.48 +0.6
1,280,222 + OLJFJH_06315 0.48 -0.2
1,280,339 + OLJFJH_06315 0.59 +0.3
1,280,343 + OLJFJH_06315 0.59 -0.6
1,280,343 + OLJFJH_06315 0.59 -0.7
1,280,343 + OLJFJH_06315 0.59 -0.6
1,280,343 + OLJFJH_06315 0.59 -2.1
1,280,344 - OLJFJH_06315 0.59 -0.6
1,280,344 - OLJFJH_06315 0.59 -0.3
1,280,370 + OLJFJH_06315 0.62 -1.2
1,280,463 + OLJFJH_06315 0.70 -0.9
1,280,464 - OLJFJH_06315 0.70 -0.7
1,280,546 + OLJFJH_06315 0.77 -0.8
1,280,546 + OLJFJH_06315 0.77 -0.8
1,280,546 + OLJFJH_06315 0.77 -1.5
1,280,546 + OLJFJH_06315 0.77 -0.2
1,280,547 - OLJFJH_06315 0.77 -0.1
1,280,547 - OLJFJH_06315 0.77 -0.5
1,280,547 - OLJFJH_06315 0.77 -0.8
1,280,547 - OLJFJH_06315 0.77 -0.9
1,280,547 - OLJFJH_06315 0.77 -1.3
1,280,635 - OLJFJH_06315 0.85 -0.4
1,280,635 - OLJFJH_06315 0.85 -0.3
1,280,635 - OLJFJH_06315 0.85 +1.7
1,280,742 + -1.5
1,280,788 + +0.9
1,280,788 + -0.6
1,280,789 - -1.0
1,280,805 + -1.5
1,280,805 + +0.1
1,280,806 - -0.9
1,280,806 - -0.2
1,280,806 - -0.8
1,280,806 - +0.9
1,280,994 + OLJFJH_06320 0.15 -1.1
1,280,994 + OLJFJH_06320 0.15 -1.1
1,280,998 + OLJFJH_06320 0.15 -0.4
1,280,999 - OLJFJH_06320 0.15 -0.4
1,280,999 - OLJFJH_06320 0.15 -0.3
1,280,999 - OLJFJH_06320 0.15 -0.4
1,281,011 - OLJFJH_06320 0.16 -0.6
1,281,095 + OLJFJH_06320 0.23 -1.5
1,281,095 + OLJFJH_06320 0.23 -1.5
1,281,465 + OLJFJH_06320 0.53 -1.9
1,281,557 + OLJFJH_06320 0.60 -0.5
1,281,558 - OLJFJH_06320 0.60 -0.9
1,281,606 + OLJFJH_06320 0.64 -1.4
1,281,606 + OLJFJH_06320 0.64 -0.7
1,281,661 - OLJFJH_06320 0.68 -0.9
1,281,673 - OLJFJH_06320 0.69 -0.6
1,281,673 - OLJFJH_06320 0.69 -0.1
1,281,848 - OLJFJH_06320 0.83 -0.6
1,281,892 + OLJFJH_06320 0.87 -1.7
1,281,928 - OLJFJH_06320 0.90 -2.2
1,281,985 + -0.5
1,281,985 + -1.3
1,281,986 - -2.6
1,281,986 - -0.3
1,281,986 - -1.2
1,281,986 - -2.1
1,281,986 - -0.1
1,281,986 - -1.5
1,281,987 + -1.6
1,281,988 - -0.1
1,281,997 + -2.4
1,281,997 + +0.2
1,282,032 + -0.3
1,282,033 - -0.7
1,282,033 - -1.1
1,282,039 + -1.6
1,282,044 + +0.1
1,282,045 - +0.2
1,282,052 + -0.3
1,282,052 + +1.8
1,282,053 - -0.1
1,282,053 - -0.4
1,282,053 - -0.5
1,282,053 - -0.9
1,282,063 + -0.9
1,282,064 - -0.4
1,282,064 - -0.2
1,282,097 + -0.4
1,282,291 + OLJFJH_06325 0.22 -1.0
1,282,379 + OLJFJH_06325 0.30 +0.2
1,282,380 - OLJFJH_06325 0.30 -1.4
1,282,380 - OLJFJH_06325 0.30 -1.6
1,282,398 + OLJFJH_06325 0.32 -0.1
1,282,399 - OLJFJH_06325 0.32 -0.9
1,282,434 + OLJFJH_06325 0.35 -0.5
1,282,434 + OLJFJH_06325 0.35 -0.3
1,282,538 - OLJFJH_06325 0.45 -1.1
1,282,538 - OLJFJH_06325 0.45 -0.7
1,282,538 - OLJFJH_06325 0.45 -1.3
1,282,644 - OLJFJH_06325 0.55 -0.8
1,282,719 - OLJFJH_06325 0.62 +0.3
1,282,722 - OLJFJH_06325 0.62 -0.7
1,282,731 + OLJFJH_06325 0.63 -1.1
1,282,731 + OLJFJH_06325 0.63 -0.8
1,282,732 - OLJFJH_06325 0.63 -1.6
1,282,732 - OLJFJH_06325 0.63 -0.6
1,282,732 - OLJFJH_06325 0.63 -1.2
1,282,732 - OLJFJH_06325 0.63 -1.2
1,282,851 + OLJFJH_06325 0.74 -0.7
1,282,851 + OLJFJH_06325 0.74 -0.9
1,282,851 + OLJFJH_06325 0.74 -0.0
1,282,852 - OLJFJH_06325 0.74 -0.5
1,282,921 + OLJFJH_06325 0.81 -1.0

Or see this region's nucleotide sequence