Strain Fitness in Erwinia amylovora T8 around OLJFJH_06310

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06300 and OLJFJH_06305 overlap by 4 nucleotidesOLJFJH_06305 and OLJFJH_06310 overlap by 23 nucleotidesOLJFJH_06310 and OLJFJH_06315 overlap by 4 nucleotides OLJFJH_06300: OLJFJH_06300 - dTDP-glucose 4 6-dehydratase, at 1,277,032 to 1,278,120 _06300 OLJFJH_06305: OLJFJH_06305 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,278,117 to 1,278,998 _06305 OLJFJH_06310: OLJFJH_06310 - dTDP-4-amino-4 6-dideoxy-D-galactose acyltransferase, at 1,278,976 to 1,279,677 _06310 OLJFJH_06315: OLJFJH_06315 - dTDP-4-amino-4 6-dideoxygalactose transaminase, at 1,279,674 to 1,280,804 _06315 Position (kb) 1278 1279 1280Strain fitness (log2 ratio) -2 -1 0 1 2at 1278.006 kb on + strand, within OLJFJH_06300at 1278.007 kb on - strand, within OLJFJH_06300at 1278.025 kb on - strandat 1278.090 kb on - strandat 1278.100 kb on - strandat 1278.100 kb on - strandat 1278.112 kb on - strandat 1278.202 kb on - strandat 1278.219 kb on + strand, within OLJFJH_06305at 1278.220 kb on - strand, within OLJFJH_06305at 1278.220 kb on - strand, within OLJFJH_06305at 1278.220 kb on - strand, within OLJFJH_06305at 1278.270 kb on - strand, within OLJFJH_06305at 1278.270 kb on - strand, within OLJFJH_06305at 1278.341 kb on + strand, within OLJFJH_06305at 1278.341 kb on + strand, within OLJFJH_06305at 1278.341 kb on + strand, within OLJFJH_06305at 1278.342 kb on - strand, within OLJFJH_06305at 1278.342 kb on - strand, within OLJFJH_06305at 1278.342 kb on - strand, within OLJFJH_06305at 1278.346 kb on - strand, within OLJFJH_06305at 1278.346 kb on - strand, within OLJFJH_06305at 1278.386 kb on + strand, within OLJFJH_06305at 1278.386 kb on + strand, within OLJFJH_06305at 1278.443 kb on + strand, within OLJFJH_06305at 1278.444 kb on - strand, within OLJFJH_06305at 1278.444 kb on - strand, within OLJFJH_06305at 1278.444 kb on - strand, within OLJFJH_06305at 1278.636 kb on + strand, within OLJFJH_06305at 1278.655 kb on + strand, within OLJFJH_06305at 1278.656 kb on - strand, within OLJFJH_06305at 1278.726 kb on + strand, within OLJFJH_06305at 1278.726 kb on + strand, within OLJFJH_06305at 1278.727 kb on - strand, within OLJFJH_06305at 1278.758 kb on - strand, within OLJFJH_06305at 1278.758 kb on - strand, within OLJFJH_06305at 1278.824 kb on + strand, within OLJFJH_06305at 1278.827 kb on - strand, within OLJFJH_06305at 1278.957 kb on + strandat 1278.957 kb on + strandat 1278.957 kb on + strandat 1278.958 kb on - strandat 1278.993 kb on + strandat 1278.994 kb on - strandat 1279.172 kb on + strand, within OLJFJH_06310at 1279.173 kb on - strand, within OLJFJH_06310at 1279.251 kb on + strand, within OLJFJH_06310at 1279.251 kb on + strand, within OLJFJH_06310at 1279.343 kb on - strand, within OLJFJH_06310at 1279.431 kb on + strand, within OLJFJH_06310at 1279.615 kb on + strandat 1279.658 kb on + strandat 1279.658 kb on + strandat 1279.658 kb on + strandat 1279.659 kb on - strandat 1279.659 kb on - strandat 1279.659 kb on - strandat 1279.659 kb on - strandat 1279.659 kb on - strandat 1279.659 kb on - strandat 1279.661 kb on - strandat 1279.661 kb on - strandat 1279.662 kb on + strandat 1279.663 kb on - strandat 1279.663 kb on - strandat 1279.663 kb on - strandat 1279.670 kb on + strandat 1279.670 kb on + strandat 1279.671 kb on - strandat 1279.671 kb on - strandat 1279.714 kb on + strandat 1279.714 kb on + strandat 1279.714 kb on + strandat 1279.715 kb on - strandat 1279.715 kb on - strandat 1279.719 kb on + strandat 1279.720 kb on - strandat 1279.720 kb on - strandat 1279.814 kb on + strand, within OLJFJH_06315at 1279.898 kb on + strand, within OLJFJH_06315at 1279.908 kb on + strand, within OLJFJH_06315at 1279.908 kb on + strand, within OLJFJH_06315at 1279.909 kb on - strand, within OLJFJH_06315at 1279.911 kb on - strand, within OLJFJH_06315at 1279.940 kb on - strand, within OLJFJH_06315at 1280.154 kb on + strand, within OLJFJH_06315at 1280.155 kb on - strand, within OLJFJH_06315at 1280.220 kb on + strand, within OLJFJH_06315at 1280.220 kb on + strand, within OLJFJH_06315at 1280.221 kb on - strand, within OLJFJH_06315at 1280.222 kb on + strand, within OLJFJH_06315at 1280.339 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.344 kb on - strand, within OLJFJH_06315at 1280.344 kb on - strand, within OLJFJH_06315at 1280.370 kb on + strand, within OLJFJH_06315at 1280.463 kb on + strand, within OLJFJH_06315at 1280.464 kb on - strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.635 kb on - strand, within OLJFJH_06315at 1280.635 kb on - strand, within OLJFJH_06315at 1280.635 kb on - strand, within OLJFJH_06315

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,278,006 + OLJFJH_06300 0.89 -0.3
1,278,007 - OLJFJH_06300 0.90 -0.2
1,278,025 - -0.5
1,278,090 - -0.1
1,278,100 - -0.4
1,278,100 - -0.6
1,278,112 - -0.9
1,278,202 - -0.7
1,278,219 + OLJFJH_06305 0.12 -0.3
1,278,220 - OLJFJH_06305 0.12 -1.4
1,278,220 - OLJFJH_06305 0.12 -0.7
1,278,220 - OLJFJH_06305 0.12 -0.2
1,278,270 - OLJFJH_06305 0.17 -0.2
1,278,270 - OLJFJH_06305 0.17 -0.2
1,278,341 + OLJFJH_06305 0.25 -0.0
1,278,341 + OLJFJH_06305 0.25 -0.4
1,278,341 + OLJFJH_06305 0.25 -0.1
1,278,342 - OLJFJH_06305 0.26 -0.3
1,278,342 - OLJFJH_06305 0.26 -0.7
1,278,342 - OLJFJH_06305 0.26 -0.3
1,278,346 - OLJFJH_06305 0.26 -1.3
1,278,346 - OLJFJH_06305 0.26 -0.5
1,278,386 + OLJFJH_06305 0.30 +0.1
1,278,386 + OLJFJH_06305 0.30 -0.4
1,278,443 + OLJFJH_06305 0.37 -0.7
1,278,444 - OLJFJH_06305 0.37 -0.3
1,278,444 - OLJFJH_06305 0.37 -0.9
1,278,444 - OLJFJH_06305 0.37 -0.6
1,278,636 + OLJFJH_06305 0.59 -0.1
1,278,655 + OLJFJH_06305 0.61 -1.0
1,278,656 - OLJFJH_06305 0.61 -0.8
1,278,726 + OLJFJH_06305 0.69 -0.7
1,278,726 + OLJFJH_06305 0.69 -1.1
1,278,727 - OLJFJH_06305 0.69 -0.9
1,278,758 - OLJFJH_06305 0.73 -0.3
1,278,758 - OLJFJH_06305 0.73 -0.8
1,278,824 + OLJFJH_06305 0.80 -0.6
1,278,827 - OLJFJH_06305 0.80 -0.9
1,278,957 + -1.3
1,278,957 + +0.1
1,278,957 + +1.1
1,278,958 - -1.8
1,278,993 + -0.8
1,278,994 - -0.6
1,279,172 + OLJFJH_06310 0.28 -0.6
1,279,173 - OLJFJH_06310 0.28 -0.6
1,279,251 + OLJFJH_06310 0.39 -1.0
1,279,251 + OLJFJH_06310 0.39 -0.5
1,279,343 - OLJFJH_06310 0.52 +0.5
1,279,431 + OLJFJH_06310 0.65 -1.8
1,279,615 + -0.8
1,279,658 + -1.1
1,279,658 + -2.0
1,279,658 + -1.6
1,279,659 - -0.3
1,279,659 - -0.5
1,279,659 - -0.3
1,279,659 - -0.9
1,279,659 - -1.1
1,279,659 - -0.5
1,279,661 - -0.4
1,279,661 - -0.8
1,279,662 + -0.4
1,279,663 - -1.2
1,279,663 - -0.8
1,279,663 - -0.4
1,279,670 + +0.1
1,279,670 + -0.7
1,279,671 - -2.4
1,279,671 - -0.5
1,279,714 + -1.1
1,279,714 + -1.0
1,279,714 + -1.6
1,279,715 - -0.9
1,279,715 - -0.7
1,279,719 + -0.2
1,279,720 - -0.4
1,279,720 - -0.2
1,279,814 + OLJFJH_06315 0.12 -0.7
1,279,898 + OLJFJH_06315 0.20 -2.5
1,279,908 + OLJFJH_06315 0.21 +0.1
1,279,908 + OLJFJH_06315 0.21 +1.9
1,279,909 - OLJFJH_06315 0.21 -0.6
1,279,911 - OLJFJH_06315 0.21 -0.7
1,279,940 - OLJFJH_06315 0.24 -0.5
1,280,154 + OLJFJH_06315 0.42 +0.2
1,280,155 - OLJFJH_06315 0.43 -0.1
1,280,220 + OLJFJH_06315 0.48 +0.3
1,280,220 + OLJFJH_06315 0.48 -1.3
1,280,221 - OLJFJH_06315 0.48 +0.6
1,280,222 + OLJFJH_06315 0.48 -0.2
1,280,339 + OLJFJH_06315 0.59 +0.3
1,280,343 + OLJFJH_06315 0.59 -0.6
1,280,343 + OLJFJH_06315 0.59 -0.7
1,280,343 + OLJFJH_06315 0.59 -0.6
1,280,343 + OLJFJH_06315 0.59 -2.1
1,280,344 - OLJFJH_06315 0.59 -0.6
1,280,344 - OLJFJH_06315 0.59 -0.3
1,280,370 + OLJFJH_06315 0.62 -1.2
1,280,463 + OLJFJH_06315 0.70 -0.9
1,280,464 - OLJFJH_06315 0.70 -0.7
1,280,546 + OLJFJH_06315 0.77 -0.8
1,280,546 + OLJFJH_06315 0.77 -0.8
1,280,546 + OLJFJH_06315 0.77 -1.5
1,280,546 + OLJFJH_06315 0.77 -0.2
1,280,547 - OLJFJH_06315 0.77 -0.1
1,280,547 - OLJFJH_06315 0.77 -0.5
1,280,547 - OLJFJH_06315 0.77 -0.8
1,280,547 - OLJFJH_06315 0.77 -0.9
1,280,547 - OLJFJH_06315 0.77 -1.3
1,280,635 - OLJFJH_06315 0.85 -0.4
1,280,635 - OLJFJH_06315 0.85 -0.3
1,280,635 - OLJFJH_06315 0.85 +1.7

Or see this region's nucleotide sequence