Strain Fitness in Erwinia amylovora T8 around OLJFJH_06270

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06265 and OLJFJH_06270 are separated by 129 nucleotidesOLJFJH_06270 and OLJFJH_06275 are separated by 368 nucleotides OLJFJH_06265: OLJFJH_06265 - ATP-dependent RNA helicase RhlB, at 1,268,765 to 1,270,057 _06265 OLJFJH_06270: OLJFJH_06270 - thioredoxin TrxA, at 1,270,187 to 1,270,516 _06270 OLJFJH_06275: OLJFJH_06275 - transcription termination factor Rho, at 1,270,885 to 1,272,144 _06275 Position (kb) 1270 1271Strain fitness (log2 ratio) -2 -1 0 1 2at 1269.244 kb on + strand, within OLJFJH_06265at 1269.245 kb on - strand, within OLJFJH_06265at 1269.364 kb on + strand, within OLJFJH_06265at 1269.364 kb on + strand, within OLJFJH_06265at 1269.364 kb on + strand, within OLJFJH_06265at 1269.405 kb on + strand, within OLJFJH_06265at 1269.406 kb on - strand, within OLJFJH_06265at 1269.523 kb on + strand, within OLJFJH_06265at 1269.550 kb on + strand, within OLJFJH_06265at 1269.550 kb on + strand, within OLJFJH_06265at 1269.550 kb on + strand, within OLJFJH_06265at 1269.551 kb on - strand, within OLJFJH_06265at 1269.551 kb on - strand, within OLJFJH_06265at 1269.551 kb on - strand, within OLJFJH_06265at 1269.648 kb on - strand, within OLJFJH_06265at 1269.674 kb on + strand, within OLJFJH_06265at 1269.674 kb on + strand, within OLJFJH_06265at 1269.674 kb on + strand, within OLJFJH_06265at 1269.675 kb on - strand, within OLJFJH_06265at 1269.675 kb on - strand, within OLJFJH_06265at 1269.703 kb on - strand, within OLJFJH_06265at 1269.729 kb on - strand, within OLJFJH_06265at 1269.911 kb on + strand, within OLJFJH_06265at 1269.912 kb on - strand, within OLJFJH_06265at 1270.041 kb on - strandat 1270.078 kb on + strandat 1270.078 kb on + strandat 1270.079 kb on - strandat 1270.081 kb on + strandat 1270.170 kb on - strandat 1270.170 kb on - strandat 1270.334 kb on + strand, within OLJFJH_06270at 1270.351 kb on + strand, within OLJFJH_06270at 1270.358 kb on - strand, within OLJFJH_06270at 1270.393 kb on + strand, within OLJFJH_06270at 1270.393 kb on + strand, within OLJFJH_06270at 1270.393 kb on + strand, within OLJFJH_06270at 1270.398 kb on - strand, within OLJFJH_06270at 1270.487 kb on - strandat 1270.624 kb on + strandat 1270.629 kb on + strandat 1270.643 kb on + strandat 1270.643 kb on + strandat 1270.671 kb on + strandat 1270.678 kb on + strandat 1270.706 kb on + strandat 1270.805 kb on + strandat 1270.807 kb on + strandat 1270.857 kb on + strandat 1270.859 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,269,244 + OLJFJH_06265 0.37 +0.1
1,269,245 - OLJFJH_06265 0.37 -0.4
1,269,364 + OLJFJH_06265 0.46 -0.3
1,269,364 + OLJFJH_06265 0.46 -0.2
1,269,364 + OLJFJH_06265 0.46 -0.3
1,269,405 + OLJFJH_06265 0.49 -0.3
1,269,406 - OLJFJH_06265 0.50 +0.2
1,269,523 + OLJFJH_06265 0.59 +0.0
1,269,550 + OLJFJH_06265 0.61 -0.5
1,269,550 + OLJFJH_06265 0.61 -0.1
1,269,550 + OLJFJH_06265 0.61 +1.3
1,269,551 - OLJFJH_06265 0.61 +0.2
1,269,551 - OLJFJH_06265 0.61 +0.3
1,269,551 - OLJFJH_06265 0.61 +0.3
1,269,648 - OLJFJH_06265 0.68 +1.4
1,269,674 + OLJFJH_06265 0.70 +0.4
1,269,674 + OLJFJH_06265 0.70 -0.2
1,269,674 + OLJFJH_06265 0.70 -0.1
1,269,675 - OLJFJH_06265 0.70 +0.1
1,269,675 - OLJFJH_06265 0.70 -0.3
1,269,703 - OLJFJH_06265 0.73 -0.1
1,269,729 - OLJFJH_06265 0.75 -0.2
1,269,911 + OLJFJH_06265 0.89 -0.1
1,269,912 - OLJFJH_06265 0.89 -0.4
1,270,041 - -0.4
1,270,078 + +0.1
1,270,078 + +0.2
1,270,079 - -0.0
1,270,081 + +1.8
1,270,170 - +0.2
1,270,170 - +0.7
1,270,334 + OLJFJH_06270 0.45 -0.2
1,270,351 + OLJFJH_06270 0.50 -0.8
1,270,358 - OLJFJH_06270 0.52 -0.7
1,270,393 + OLJFJH_06270 0.62 -2.3
1,270,393 + OLJFJH_06270 0.62 -0.4
1,270,393 + OLJFJH_06270 0.62 -0.6
1,270,398 - OLJFJH_06270 0.64 -1.3
1,270,487 - +0.3
1,270,624 + -0.1
1,270,629 + +0.0
1,270,643 + -0.5
1,270,643 + -0.3
1,270,671 + -0.1
1,270,678 + -0.2
1,270,706 + +0.2
1,270,805 + -0.0
1,270,807 + -0.6
1,270,857 + -0.9
1,270,859 + -1.4

Or see this region's nucleotide sequence