Strain Fitness in Erwinia amylovora T8 around OLJFJH_06205

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06200 and OLJFJH_06205 are separated by 120 nucleotidesOLJFJH_06205 and OLJFJH_06210 are separated by 31 nucleotides OLJFJH_06200: OLJFJH_06200 - HTH-type transcriptional regulator HdfR, at 1,252,549 to 1,253,376 _06200 OLJFJH_06205: OLJFJH_06205 - Protein of unknown function DUF, at 1,253,497 to 1,253,835 _06205 OLJFJH_06210: OLJFJH_06210 - YifB family Mg chelatase-like AAA ATPase, at 1,253,867 to 1,255,387 _06210 Position (kb) 1253 1254Strain fitness (log2 ratio) -2 -1 0 1at 1252.505 kb on - strandat 1252.550 kb on + strandat 1252.575 kb on + strandat 1252.575 kb on + strandat 1252.669 kb on - strand, within OLJFJH_06200at 1252.679 kb on + strand, within OLJFJH_06200at 1252.725 kb on + strand, within OLJFJH_06200at 1252.725 kb on + strand, within OLJFJH_06200at 1252.726 kb on - strand, within OLJFJH_06200at 1252.839 kb on + strand, within OLJFJH_06200at 1252.840 kb on - strand, within OLJFJH_06200at 1252.848 kb on - strand, within OLJFJH_06200at 1252.870 kb on - strand, within OLJFJH_06200at 1253.081 kb on - strand, within OLJFJH_06200at 1253.125 kb on - strand, within OLJFJH_06200at 1253.157 kb on + strand, within OLJFJH_06200at 1253.445 kb on + strandat 1253.445 kb on + strandat 1253.446 kb on - strandat 1253.446 kb on - strandat 1253.446 kb on - strandat 1253.464 kb on + strandat 1253.465 kb on - strandat 1253.477 kb on + strandat 1253.477 kb on + strandat 1253.477 kb on + strandat 1253.477 kb on + strandat 1253.477 kb on + strandat 1253.477 kb on + strandat 1253.477 kb on + strandat 1253.478 kb on - strandat 1253.478 kb on - strandat 1253.578 kb on - strand, within OLJFJH_06205at 1253.580 kb on + strand, within OLJFJH_06205at 1253.622 kb on + strand, within OLJFJH_06205at 1253.773 kb on - strand, within OLJFJH_06205at 1253.815 kb on + strandat 1253.868 kb on + strandat 1253.885 kb on + strandat 1253.885 kb on + strandat 1254.076 kb on + strand, within OLJFJH_06210at 1254.233 kb on + strand, within OLJFJH_06210at 1254.333 kb on + strand, within OLJFJH_06210at 1254.387 kb on + strand, within OLJFJH_06210at 1254.419 kb on - strand, within OLJFJH_06210at 1254.419 kb on - strand, within OLJFJH_06210at 1254.419 kb on - strand, within OLJFJH_06210at 1254.533 kb on - strand, within OLJFJH_06210at 1254.561 kb on + strand, within OLJFJH_06210at 1254.562 kb on - strand, within OLJFJH_06210at 1254.610 kb on + strand, within OLJFJH_06210at 1254.611 kb on - strand, within OLJFJH_06210at 1254.697 kb on + strand, within OLJFJH_06210at 1254.698 kb on - strand, within OLJFJH_06210at 1254.698 kb on - strand, within OLJFJH_06210at 1254.819 kb on - strand, within OLJFJH_06210at 1254.819 kb on - strand, within OLJFJH_06210

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,252,505 - -0.2
1,252,550 + +0.1
1,252,575 + -0.9
1,252,575 + +0.1
1,252,669 - OLJFJH_06200 0.14 -0.6
1,252,679 + OLJFJH_06200 0.16 -1.9
1,252,725 + OLJFJH_06200 0.21 +0.2
1,252,725 + OLJFJH_06200 0.21 -0.6
1,252,726 - OLJFJH_06200 0.21 -0.1
1,252,839 + OLJFJH_06200 0.35 -1.9
1,252,840 - OLJFJH_06200 0.35 -0.1
1,252,848 - OLJFJH_06200 0.36 -2.0
1,252,870 - OLJFJH_06200 0.39 +0.5
1,253,081 - OLJFJH_06200 0.64 -0.6
1,253,125 - OLJFJH_06200 0.70 -1.4
1,253,157 + OLJFJH_06200 0.73 +0.4
1,253,445 + -0.5
1,253,445 + -1.2
1,253,446 - -0.1
1,253,446 - +0.9
1,253,446 - -1.1
1,253,464 + -0.2
1,253,465 - -0.6
1,253,477 + +0.2
1,253,477 + -0.6
1,253,477 + +0.4
1,253,477 + -0.3
1,253,477 + -1.1
1,253,477 + -0.4
1,253,477 + -1.5
1,253,478 - -1.4
1,253,478 - -0.9
1,253,578 - OLJFJH_06205 0.24 +0.5
1,253,580 + OLJFJH_06205 0.24 -0.4
1,253,622 + OLJFJH_06205 0.37 -1.1
1,253,773 - OLJFJH_06205 0.81 +0.4
1,253,815 + -0.6
1,253,868 + +0.4
1,253,885 + +0.4
1,253,885 + +0.6
1,254,076 + OLJFJH_06210 0.14 +0.9
1,254,233 + OLJFJH_06210 0.24 +0.1
1,254,333 + OLJFJH_06210 0.31 +0.6
1,254,387 + OLJFJH_06210 0.34 +0.4
1,254,419 - OLJFJH_06210 0.36 +0.2
1,254,419 - OLJFJH_06210 0.36 -0.4
1,254,419 - OLJFJH_06210 0.36 +0.4
1,254,533 - OLJFJH_06210 0.44 +0.0
1,254,561 + OLJFJH_06210 0.46 -0.1
1,254,562 - OLJFJH_06210 0.46 +0.0
1,254,610 + OLJFJH_06210 0.49 +0.3
1,254,611 - OLJFJH_06210 0.49 -0.4
1,254,697 + OLJFJH_06210 0.55 +0.1
1,254,698 - OLJFJH_06210 0.55 -0.6
1,254,698 - OLJFJH_06210 0.55 +0.1
1,254,819 - OLJFJH_06210 0.63 -0.2
1,254,819 - OLJFJH_06210 0.63 +0.9

Or see this region's nucleotide sequence