Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_06180 and OLJFJH_06185 are separated by 215 nucleotides OLJFJH_06185 and OLJFJH_06190 are separated by 100 nucleotides OLJFJH_06190 and OLJFJH_06195 are separated by 7 nucleotides OLJFJH_06195 and OLJFJH_06200 are separated by 117 nucleotides OLJFJH_06200 and OLJFJH_06205 are separated by 120 nucleotides OLJFJH_06205 and OLJFJH_06210 are separated by 31 nucleotides
OLJFJH_06180: OLJFJH_06180 - 23S ribosomal RNA, at 1,248,934 to 1,251,840
_06180
OLJFJH_06185: OLJFJH_06185 - 5S ribosomal RNA, at 1,252,056 to 1,252,171
_06185
OLJFJH_06190: OLJFJH_06190 - tRNA-Asp, at 1,252,272 to 1,252,348
_06190
OLJFJH_06195: OLJFJH_06195 - tRNA-Trp, at 1,252,356 to 1,252,431
_06195
OLJFJH_06200: OLJFJH_06200 - HTH-type transcriptional regulator HdfR, at 1,252,549 to 1,253,376
_06200
OLJFJH_06205: OLJFJH_06205 - Protein of unknown function DUF, at 1,253,497 to 1,253,835
_06205
OLJFJH_06210: OLJFJH_06210 - YifB family Mg chelatase-like AAA ATPase, at 1,253,867 to 1,255,387
_06210
Position (kb) 1252
1253
1254 Strain fitness (log2 ratio) -2
-1
0
1 at 1252.505 kb on - strand at 1252.550 kb on + strand at 1252.575 kb on + strand at 1252.575 kb on + strand at 1252.669 kb on - strand, within OLJFJH_06200 at 1252.679 kb on + strand, within OLJFJH_06200 at 1252.725 kb on + strand, within OLJFJH_06200 at 1252.725 kb on + strand, within OLJFJH_06200 at 1252.726 kb on - strand, within OLJFJH_06200 at 1252.839 kb on + strand, within OLJFJH_06200 at 1252.840 kb on - strand, within OLJFJH_06200 at 1252.848 kb on - strand, within OLJFJH_06200 at 1252.870 kb on - strand, within OLJFJH_06200 at 1253.081 kb on - strand, within OLJFJH_06200 at 1253.125 kb on - strand, within OLJFJH_06200 at 1253.157 kb on + strand, within OLJFJH_06200 at 1253.445 kb on + strand at 1253.445 kb on + strand at 1253.446 kb on - strand at 1253.446 kb on - strand at 1253.446 kb on - strand at 1253.464 kb on + strand at 1253.465 kb on - strand at 1253.477 kb on + strand at 1253.477 kb on + strand at 1253.477 kb on + strand at 1253.477 kb on + strand at 1253.477 kb on + strand at 1253.477 kb on + strand at 1253.477 kb on + strand at 1253.478 kb on - strand at 1253.478 kb on - strand at 1253.578 kb on - strand, within OLJFJH_06205 at 1253.580 kb on + strand, within OLJFJH_06205 at 1253.622 kb on + strand, within OLJFJH_06205 at 1253.773 kb on - strand, within OLJFJH_06205 at 1253.815 kb on + strand at 1253.868 kb on + strand at 1253.885 kb on + strand at 1253.885 kb on + strand at 1254.076 kb on + strand, within OLJFJH_06210 at 1254.233 kb on + strand, within OLJFJH_06210 at 1254.333 kb on + strand, within OLJFJH_06210
Per-strain Table
Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1) remove 1,252,505 - -0.2 1,252,550 + +0.1 1,252,575 + -0.9 1,252,575 + +0.1 1,252,669 - OLJFJH_06200 0.14 -0.6 1,252,679 + OLJFJH_06200 0.16 -1.9 1,252,725 + OLJFJH_06200 0.21 +0.2 1,252,725 + OLJFJH_06200 0.21 -0.6 1,252,726 - OLJFJH_06200 0.21 -0.1 1,252,839 + OLJFJH_06200 0.35 -1.9 1,252,840 - OLJFJH_06200 0.35 -0.1 1,252,848 - OLJFJH_06200 0.36 -2.0 1,252,870 - OLJFJH_06200 0.39 +0.5 1,253,081 - OLJFJH_06200 0.64 -0.6 1,253,125 - OLJFJH_06200 0.70 -1.4 1,253,157 + OLJFJH_06200 0.73 +0.4 1,253,445 + -0.5 1,253,445 + -1.2 1,253,446 - -0.1 1,253,446 - +0.9 1,253,446 - -1.1 1,253,464 + -0.2 1,253,465 - -0.6 1,253,477 + +0.2 1,253,477 + -0.6 1,253,477 + +0.4 1,253,477 + -0.3 1,253,477 + -1.1 1,253,477 + -0.4 1,253,477 + -1.5 1,253,478 - -1.4 1,253,478 - -0.9 1,253,578 - OLJFJH_06205 0.24 +0.5 1,253,580 + OLJFJH_06205 0.24 -0.4 1,253,622 + OLJFJH_06205 0.37 -1.1 1,253,773 - OLJFJH_06205 0.81 +0.4 1,253,815 + -0.6 1,253,868 + +0.4 1,253,885 + +0.4 1,253,885 + +0.6 1,254,076 + OLJFJH_06210 0.14 +0.9 1,254,233 + OLJFJH_06210 0.24 +0.1 1,254,333 + OLJFJH_06210 0.31 +0.6
Or see this region's nucleotide sequence