Strain Fitness in Erwinia amylovora T8 around OLJFJH_06040

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06035 and OLJFJH_06040 are separated by 46 nucleotidesOLJFJH_06040 and OLJFJH_06045 are separated by 43 nucleotides OLJFJH_06035: OLJFJH_06035 - arsenic resistance protein, at 1,213,492 to 1,214,493 _06035 OLJFJH_06040: OLJFJH_06040 - glycerol kinase GlpK, at 1,214,540 to 1,216,054 _06040 OLJFJH_06045: OLJFJH_06045 - aquaporin, at 1,216,098 to 1,216,931 _06045 Position (kb) 1214 1215 1216 1217Strain fitness (log2 ratio) -2 -1 0 1 2at 1213.660 kb on + strand, within OLJFJH_06035at 1213.660 kb on + strand, within OLJFJH_06035at 1213.660 kb on + strand, within OLJFJH_06035at 1213.660 kb on + strand, within OLJFJH_06035at 1213.660 kb on + strand, within OLJFJH_06035at 1213.660 kb on + strand, within OLJFJH_06035at 1213.660 kb on + strand, within OLJFJH_06035at 1213.661 kb on - strand, within OLJFJH_06035at 1213.661 kb on - strand, within OLJFJH_06035at 1213.661 kb on - strand, within OLJFJH_06035at 1213.661 kb on - strand, within OLJFJH_06035at 1213.727 kb on + strand, within OLJFJH_06035at 1213.743 kb on + strand, within OLJFJH_06035at 1213.852 kb on + strand, within OLJFJH_06035at 1213.853 kb on - strand, within OLJFJH_06035at 1213.853 kb on - strand, within OLJFJH_06035at 1213.919 kb on + strand, within OLJFJH_06035at 1213.919 kb on + strand, within OLJFJH_06035at 1213.920 kb on - strand, within OLJFJH_06035at 1213.920 kb on - strand, within OLJFJH_06035at 1213.920 kb on - strand, within OLJFJH_06035at 1213.950 kb on - strand, within OLJFJH_06035at 1213.950 kb on - strand, within OLJFJH_06035at 1213.950 kb on - strand, within OLJFJH_06035at 1213.952 kb on - strand, within OLJFJH_06035at 1213.952 kb on - strand, within OLJFJH_06035at 1213.952 kb on - strand, within OLJFJH_06035at 1213.952 kb on - strand, within OLJFJH_06035at 1214.147 kb on + strand, within OLJFJH_06035at 1214.147 kb on + strand, within OLJFJH_06035at 1214.148 kb on - strand, within OLJFJH_06035at 1214.148 kb on - strand, within OLJFJH_06035at 1214.151 kb on + strand, within OLJFJH_06035at 1214.151 kb on + strand, within OLJFJH_06035at 1214.221 kb on + strand, within OLJFJH_06035at 1214.221 kb on + strand, within OLJFJH_06035at 1214.222 kb on - strand, within OLJFJH_06035at 1214.222 kb on - strand, within OLJFJH_06035at 1214.343 kb on - strand, within OLJFJH_06035at 1214.414 kb on + strandat 1214.414 kb on + strandat 1214.415 kb on - strandat 1214.415 kb on - strandat 1214.415 kb on - strandat 1214.423 kb on + strandat 1214.423 kb on + strandat 1214.423 kb on + strandat 1214.423 kb on + strandat 1214.542 kb on - strandat 1214.602 kb on - strandat 1214.612 kb on - strandat 1214.669 kb on + strandat 1214.669 kb on + strandat 1214.669 kb on + strandat 1214.670 kb on - strandat 1214.670 kb on - strandat 1214.670 kb on - strandat 1214.735 kb on + strand, within OLJFJH_06040at 1214.923 kb on + strand, within OLJFJH_06040at 1214.924 kb on - strand, within OLJFJH_06040at 1214.924 kb on - strand, within OLJFJH_06040at 1214.974 kb on - strand, within OLJFJH_06040at 1214.996 kb on + strand, within OLJFJH_06040at 1215.019 kb on + strand, within OLJFJH_06040at 1215.020 kb on - strand, within OLJFJH_06040at 1215.021 kb on + strand, within OLJFJH_06040at 1215.021 kb on + strand, within OLJFJH_06040at 1215.021 kb on + strand, within OLJFJH_06040at 1215.021 kb on + strand, within OLJFJH_06040at 1215.022 kb on - strand, within OLJFJH_06040at 1215.022 kb on - strand, within OLJFJH_06040at 1215.022 kb on - strand, within OLJFJH_06040at 1215.022 kb on - strand, within OLJFJH_06040at 1215.058 kb on - strand, within OLJFJH_06040at 1215.255 kb on + strand, within OLJFJH_06040at 1215.255 kb on + strand, within OLJFJH_06040at 1215.645 kb on + strand, within OLJFJH_06040at 1215.646 kb on - strand, within OLJFJH_06040at 1215.682 kb on - strand, within OLJFJH_06040at 1215.682 kb on - strand, within OLJFJH_06040at 1215.704 kb on + strand, within OLJFJH_06040at 1215.718 kb on - strand, within OLJFJH_06040at 1215.756 kb on + strand, within OLJFJH_06040at 1215.756 kb on + strand, within OLJFJH_06040at 1215.756 kb on + strand, within OLJFJH_06040at 1215.756 kb on + strand, within OLJFJH_06040at 1215.756 kb on + strand, within OLJFJH_06040at 1215.756 kb on + strand, within OLJFJH_06040at 1215.757 kb on - strand, within OLJFJH_06040at 1215.757 kb on - strand, within OLJFJH_06040at 1215.757 kb on - strand, within OLJFJH_06040at 1215.809 kb on - strand, within OLJFJH_06040at 1215.929 kb on - strandat 1215.933 kb on + strandat 1215.934 kb on - strandat 1216.054 kb on + strandat 1216.054 kb on + strandat 1216.054 kb on + strandat 1216.073 kb on + strandat 1216.074 kb on - strandat 1216.135 kb on - strandat 1216.235 kb on - strand, within OLJFJH_06045at 1216.235 kb on - strand, within OLJFJH_06045at 1216.235 kb on - strand, within OLJFJH_06045at 1216.455 kb on - strand, within OLJFJH_06045at 1216.517 kb on - strand, within OLJFJH_06045at 1216.517 kb on - strand, within OLJFJH_06045at 1216.601 kb on + strand, within OLJFJH_06045at 1216.601 kb on + strand, within OLJFJH_06045at 1216.602 kb on - strand, within OLJFJH_06045at 1216.602 kb on - strand, within OLJFJH_06045at 1216.606 kb on + strand, within OLJFJH_06045at 1216.607 kb on - strand, within OLJFJH_06045at 1216.607 kb on - strand, within OLJFJH_06045at 1216.607 kb on - strand, within OLJFJH_06045at 1216.664 kb on - strand, within OLJFJH_06045at 1216.759 kb on + strand, within OLJFJH_06045at 1216.760 kb on - strand, within OLJFJH_06045at 1216.863 kb on + strandat 1216.864 kb on - strandat 1216.908 kb on - strandat 1217.001 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,213,660 + OLJFJH_06035 0.17 +0.1
1,213,660 + OLJFJH_06035 0.17 -0.1
1,213,660 + OLJFJH_06035 0.17 +0.3
1,213,660 + OLJFJH_06035 0.17 -0.2
1,213,660 + OLJFJH_06035 0.17 -0.1
1,213,660 + OLJFJH_06035 0.17 +1.5
1,213,660 + OLJFJH_06035 0.17 +0.2
1,213,661 - OLJFJH_06035 0.17 -0.1
1,213,661 - OLJFJH_06035 0.17 -0.3
1,213,661 - OLJFJH_06035 0.17 +0.3
1,213,661 - OLJFJH_06035 0.17 -0.1
1,213,727 + OLJFJH_06035 0.23 +0.3
1,213,743 + OLJFJH_06035 0.25 +0.8
1,213,852 + OLJFJH_06035 0.36 -0.1
1,213,853 - OLJFJH_06035 0.36 -1.4
1,213,853 - OLJFJH_06035 0.36 +0.0
1,213,919 + OLJFJH_06035 0.43 +0.3
1,213,919 + OLJFJH_06035 0.43 +0.4
1,213,920 - OLJFJH_06035 0.43 +0.2
1,213,920 - OLJFJH_06035 0.43 -0.2
1,213,920 - OLJFJH_06035 0.43 -0.3
1,213,950 - OLJFJH_06035 0.46 +0.7
1,213,950 - OLJFJH_06035 0.46 +0.4
1,213,950 - OLJFJH_06035 0.46 +0.3
1,213,952 - OLJFJH_06035 0.46 -0.1
1,213,952 - OLJFJH_06035 0.46 +0.3
1,213,952 - OLJFJH_06035 0.46 +0.1
1,213,952 - OLJFJH_06035 0.46 +0.1
1,214,147 + OLJFJH_06035 0.65 -1.0
1,214,147 + OLJFJH_06035 0.65 -0.1
1,214,148 - OLJFJH_06035 0.65 -1.1
1,214,148 - OLJFJH_06035 0.65 +0.1
1,214,151 + OLJFJH_06035 0.66 -0.2
1,214,151 + OLJFJH_06035 0.66 -0.1
1,214,221 + OLJFJH_06035 0.73 +0.1
1,214,221 + OLJFJH_06035 0.73 -0.2
1,214,222 - OLJFJH_06035 0.73 +0.3
1,214,222 - OLJFJH_06035 0.73 -0.0
1,214,343 - OLJFJH_06035 0.85 -0.0
1,214,414 + -0.1
1,214,414 + -0.5
1,214,415 - +0.0
1,214,415 - +0.3
1,214,415 - -0.2
1,214,423 + -0.1
1,214,423 + +0.2
1,214,423 + -1.5
1,214,423 + +0.2
1,214,542 - -0.2
1,214,602 - +0.1
1,214,612 - -0.1
1,214,669 + -1.4
1,214,669 + -1.5
1,214,669 + -0.4
1,214,670 - -0.4
1,214,670 - -0.9
1,214,670 - +0.0
1,214,735 + OLJFJH_06040 0.13 -0.5
1,214,923 + OLJFJH_06040 0.25 -0.7
1,214,924 - OLJFJH_06040 0.25 -2.1
1,214,924 - OLJFJH_06040 0.25 -0.1
1,214,974 - OLJFJH_06040 0.29 -0.9
1,214,996 + OLJFJH_06040 0.30 -0.8
1,215,019 + OLJFJH_06040 0.32 -1.0
1,215,020 - OLJFJH_06040 0.32 -0.4
1,215,021 + OLJFJH_06040 0.32 -0.4
1,215,021 + OLJFJH_06040 0.32 -0.3
1,215,021 + OLJFJH_06040 0.32 -0.9
1,215,021 + OLJFJH_06040 0.32 -1.3
1,215,022 - OLJFJH_06040 0.32 -0.7
1,215,022 - OLJFJH_06040 0.32 -1.2
1,215,022 - OLJFJH_06040 0.32 +0.9
1,215,022 - OLJFJH_06040 0.32 -0.6
1,215,058 - OLJFJH_06040 0.34 -0.3
1,215,255 + OLJFJH_06040 0.47 -1.1
1,215,255 + OLJFJH_06040 0.47 -1.5
1,215,645 + OLJFJH_06040 0.73 -1.1
1,215,646 - OLJFJH_06040 0.73 +0.9
1,215,682 - OLJFJH_06040 0.75 -0.4
1,215,682 - OLJFJH_06040 0.75 -0.8
1,215,704 + OLJFJH_06040 0.77 -1.2
1,215,718 - OLJFJH_06040 0.78 +0.6
1,215,756 + OLJFJH_06040 0.80 -1.3
1,215,756 + OLJFJH_06040 0.80 -1.7
1,215,756 + OLJFJH_06040 0.80 -1.1
1,215,756 + OLJFJH_06040 0.80 -0.7
1,215,756 + OLJFJH_06040 0.80 -0.9
1,215,756 + OLJFJH_06040 0.80 -1.2
1,215,757 - OLJFJH_06040 0.80 -0.9
1,215,757 - OLJFJH_06040 0.80 -0.9
1,215,757 - OLJFJH_06040 0.80 -1.1
1,215,809 - OLJFJH_06040 0.84 -0.7
1,215,929 - -0.1
1,215,933 + -0.2
1,215,934 - -0.8
1,216,054 + -1.1
1,216,054 + -2.1
1,216,054 + -1.1
1,216,073 + -0.1
1,216,074 - +0.3
1,216,135 - +1.0
1,216,235 - OLJFJH_06045 0.16 +0.1
1,216,235 - OLJFJH_06045 0.16 +0.0
1,216,235 - OLJFJH_06045 0.16 +0.2
1,216,455 - OLJFJH_06045 0.43 -1.6
1,216,517 - OLJFJH_06045 0.50 +1.1
1,216,517 - OLJFJH_06045 0.50 -0.5
1,216,601 + OLJFJH_06045 0.60 +0.0
1,216,601 + OLJFJH_06045 0.60 -1.2
1,216,602 - OLJFJH_06045 0.60 +0.2
1,216,602 - OLJFJH_06045 0.60 -0.5
1,216,606 + OLJFJH_06045 0.61 -1.0
1,216,607 - OLJFJH_06045 0.61 +0.5
1,216,607 - OLJFJH_06045 0.61 -0.7
1,216,607 - OLJFJH_06045 0.61 +1.9
1,216,664 - OLJFJH_06045 0.68 -0.2
1,216,759 + OLJFJH_06045 0.79 -0.7
1,216,760 - OLJFJH_06045 0.79 -1.2
1,216,863 + +0.2
1,216,864 - -0.8
1,216,908 - -1.3
1,217,001 - +0.0

Or see this region's nucleotide sequence