Strain Fitness in Erwinia amylovora T8 around OLJFJH_05920

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05915 and OLJFJH_05920 are separated by 62 nucleotidesOLJFJH_05920 and OLJFJH_05925 are separated by 98 nucleotidesOLJFJH_05925 and OLJFJH_05930 are separated by 38 nucleotides OLJFJH_05915: OLJFJH_05915 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,193,501 to 1,194,520 _05915 OLJFJH_05920: OLJFJH_05920 - serine O-acetyltransferase, at 1,194,583 to 1,195,401 _05920 OLJFJH_05925: OLJFJH_05925 - tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL, at 1,195,500 to 1,195,970 _05925 OLJFJH_05930: OLJFJH_05930 - envelope stress sensor histidine kinase CpxA, at 1,196,009 to 1,197,388 _05930 Position (kb) 1194 1195 1196Strain fitness (log2 ratio) -1 0 1 2at 1193.631 kb on + strand, within OLJFJH_05915at 1193.631 kb on + strand, within OLJFJH_05915at 1193.631 kb on + strand, within OLJFJH_05915at 1193.632 kb on - strand, within OLJFJH_05915at 1193.683 kb on + strand, within OLJFJH_05915at 1193.684 kb on - strand, within OLJFJH_05915at 1193.760 kb on + strand, within OLJFJH_05915at 1193.760 kb on + strand, within OLJFJH_05915at 1193.760 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.773 kb on - strand, within OLJFJH_05915at 1193.773 kb on - strand, within OLJFJH_05915at 1193.773 kb on - strand, within OLJFJH_05915at 1193.828 kb on - strand, within OLJFJH_05915at 1194.000 kb on + strand, within OLJFJH_05915at 1194.000 kb on + strand, within OLJFJH_05915at 1194.009 kb on + strand, within OLJFJH_05915at 1194.039 kb on - strand, within OLJFJH_05915at 1194.246 kb on + strand, within OLJFJH_05915at 1194.246 kb on + strand, within OLJFJH_05915at 1194.278 kb on - strand, within OLJFJH_05915at 1194.378 kb on + strand, within OLJFJH_05915at 1194.378 kb on + strand, within OLJFJH_05915at 1194.398 kb on + strand, within OLJFJH_05915at 1194.474 kb on + strandat 1194.518 kb on + strandat 1194.670 kb on + strand, within OLJFJH_05920at 1194.718 kb on + strand, within OLJFJH_05920at 1194.718 kb on + strand, within OLJFJH_05920at 1194.718 kb on + strand, within OLJFJH_05920at 1194.719 kb on - strand, within OLJFJH_05920at 1194.719 kb on - strand, within OLJFJH_05920at 1194.719 kb on - strand, within OLJFJH_05920at 1194.732 kb on + strand, within OLJFJH_05920at 1194.732 kb on + strand, within OLJFJH_05920at 1194.732 kb on + strand, within OLJFJH_05920at 1194.732 kb on + strand, within OLJFJH_05920at 1194.733 kb on - strand, within OLJFJH_05920at 1194.733 kb on - strand, within OLJFJH_05920at 1194.733 kb on - strand, within OLJFJH_05920at 1194.759 kb on + strand, within OLJFJH_05920at 1194.759 kb on + strand, within OLJFJH_05920at 1194.813 kb on + strand, within OLJFJH_05920at 1194.813 kb on + strand, within OLJFJH_05920at 1194.814 kb on - strand, within OLJFJH_05920at 1194.871 kb on + strand, within OLJFJH_05920at 1194.871 kb on + strand, within OLJFJH_05920at 1194.872 kb on - strand, within OLJFJH_05920at 1194.919 kb on + strand, within OLJFJH_05920at 1194.924 kb on + strand, within OLJFJH_05920at 1194.925 kb on - strand, within OLJFJH_05920at 1195.086 kb on + strand, within OLJFJH_05920at 1195.087 kb on - strand, within OLJFJH_05920at 1195.161 kb on + strand, within OLJFJH_05920at 1195.162 kb on - strand, within OLJFJH_05920at 1195.259 kb on + strand, within OLJFJH_05920at 1195.259 kb on + strand, within OLJFJH_05920at 1195.260 kb on - strand, within OLJFJH_05920at 1195.260 kb on - strand, within OLJFJH_05920at 1195.305 kb on + strand, within OLJFJH_05920at 1195.306 kb on - strand, within OLJFJH_05920at 1195.413 kb on - strandat 1195.413 kb on - strandat 1195.526 kb on - strandat 1195.575 kb on + strand, within OLJFJH_05925at 1195.575 kb on + strand, within OLJFJH_05925at 1195.575 kb on + strand, within OLJFJH_05925at 1195.687 kb on + strand, within OLJFJH_05925at 1195.688 kb on - strand, within OLJFJH_05925at 1195.703 kb on - strand, within OLJFJH_05925at 1195.851 kb on - strand, within OLJFJH_05925at 1195.956 kb on + strandat 1195.964 kb on + strandat 1195.964 kb on + strandat 1195.964 kb on + strandat 1195.965 kb on - strandat 1195.965 kb on - strandat 1196.027 kb on - strandat 1196.027 kb on - strandat 1196.028 kb on + strandat 1196.029 kb on - strandat 1196.029 kb on - strandat 1196.043 kb on - strandat 1196.303 kb on + strand, within OLJFJH_05930at 1196.303 kb on + strand, within OLJFJH_05930at 1196.303 kb on + strand, within OLJFJH_05930at 1196.359 kb on - strand, within OLJFJH_05930

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,193,631 + OLJFJH_05915 0.13 -0.4
1,193,631 + OLJFJH_05915 0.13 +0.0
1,193,631 + OLJFJH_05915 0.13 -0.4
1,193,632 - OLJFJH_05915 0.13 -0.1
1,193,683 + OLJFJH_05915 0.18 +0.3
1,193,684 - OLJFJH_05915 0.18 +0.3
1,193,760 + OLJFJH_05915 0.25 +0.2
1,193,760 + OLJFJH_05915 0.25 -0.1
1,193,760 + OLJFJH_05915 0.25 -0.2
1,193,772 + OLJFJH_05915 0.27 -0.0
1,193,772 + OLJFJH_05915 0.27 +0.3
1,193,772 + OLJFJH_05915 0.27 +0.7
1,193,772 + OLJFJH_05915 0.27 -0.1
1,193,772 + OLJFJH_05915 0.27 -0.0
1,193,772 + OLJFJH_05915 0.27 -0.0
1,193,772 + OLJFJH_05915 0.27 +0.2
1,193,772 + OLJFJH_05915 0.27 -0.2
1,193,772 + OLJFJH_05915 0.27 -0.2
1,193,773 - OLJFJH_05915 0.27 +0.4
1,193,773 - OLJFJH_05915 0.27 -0.5
1,193,773 - OLJFJH_05915 0.27 -0.1
1,193,828 - OLJFJH_05915 0.32 +0.2
1,194,000 + OLJFJH_05915 0.49 +0.2
1,194,000 + OLJFJH_05915 0.49 +0.2
1,194,009 + OLJFJH_05915 0.50 -0.7
1,194,039 - OLJFJH_05915 0.53 +0.6
1,194,246 + OLJFJH_05915 0.73 +0.1
1,194,246 + OLJFJH_05915 0.73 -0.1
1,194,278 - OLJFJH_05915 0.76 +1.7
1,194,378 + OLJFJH_05915 0.86 +1.9
1,194,378 + OLJFJH_05915 0.86 +0.3
1,194,398 + OLJFJH_05915 0.88 -0.5
1,194,474 + +0.2
1,194,518 + +1.7
1,194,670 + OLJFJH_05920 0.11 -1.7
1,194,718 + OLJFJH_05920 0.16 -0.5
1,194,718 + OLJFJH_05920 0.16 -0.7
1,194,718 + OLJFJH_05920 0.16 +0.1
1,194,719 - OLJFJH_05920 0.17 -0.3
1,194,719 - OLJFJH_05920 0.17 +0.3
1,194,719 - OLJFJH_05920 0.17 -1.0
1,194,732 + OLJFJH_05920 0.18 -0.7
1,194,732 + OLJFJH_05920 0.18 -0.4
1,194,732 + OLJFJH_05920 0.18 +0.1
1,194,732 + OLJFJH_05920 0.18 +0.7
1,194,733 - OLJFJH_05920 0.18 -0.6
1,194,733 - OLJFJH_05920 0.18 -0.3
1,194,733 - OLJFJH_05920 0.18 -0.8
1,194,759 + OLJFJH_05920 0.21 -1.1
1,194,759 + OLJFJH_05920 0.21 -0.6
1,194,813 + OLJFJH_05920 0.28 +0.4
1,194,813 + OLJFJH_05920 0.28 -0.7
1,194,814 - OLJFJH_05920 0.28 -0.3
1,194,871 + OLJFJH_05920 0.35 -0.8
1,194,871 + OLJFJH_05920 0.35 +0.7
1,194,872 - OLJFJH_05920 0.35 -0.9
1,194,919 + OLJFJH_05920 0.41 +0.9
1,194,924 + OLJFJH_05920 0.42 -0.6
1,194,925 - OLJFJH_05920 0.42 -0.8
1,195,086 + OLJFJH_05920 0.61 -1.5
1,195,087 - OLJFJH_05920 0.62 -1.0
1,195,161 + OLJFJH_05920 0.71 -0.9
1,195,162 - OLJFJH_05920 0.71 -1.1
1,195,259 + OLJFJH_05920 0.83 -1.1
1,195,259 + OLJFJH_05920 0.83 +0.7
1,195,260 - OLJFJH_05920 0.83 -0.6
1,195,260 - OLJFJH_05920 0.83 -0.5
1,195,305 + OLJFJH_05920 0.88 -0.2
1,195,306 - OLJFJH_05920 0.88 -1.6
1,195,413 - -0.2
1,195,413 - +0.1
1,195,526 - +0.0
1,195,575 + OLJFJH_05925 0.16 -0.5
1,195,575 + OLJFJH_05925 0.16 -0.2
1,195,575 + OLJFJH_05925 0.16 +0.5
1,195,687 + OLJFJH_05925 0.40 -0.3
1,195,688 - OLJFJH_05925 0.40 -0.3
1,195,703 - OLJFJH_05925 0.43 +0.2
1,195,851 - OLJFJH_05925 0.75 +0.7
1,195,956 + -0.3
1,195,964 + +0.1
1,195,964 + -0.2
1,195,964 + +1.9
1,195,965 - -0.0
1,195,965 - -0.1
1,196,027 - -0.2
1,196,027 - +0.4
1,196,028 + -0.4
1,196,029 - -0.0
1,196,029 - +0.2
1,196,043 - -0.4
1,196,303 + OLJFJH_05930 0.21 -0.1
1,196,303 + OLJFJH_05930 0.21 +0.0
1,196,303 + OLJFJH_05930 0.21 -1.5
1,196,359 - OLJFJH_05930 0.25 +0.6

Or see this region's nucleotide sequence