Strain Fitness in Erwinia amylovora T8 around OLJFJH_05865

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05855 and OLJFJH_05860 are separated by 12 nucleotidesOLJFJH_05860 and OLJFJH_05865 overlap by 7 nucleotidesOLJFJH_05865 and OLJFJH_05870 are separated by 19 nucleotides OLJFJH_05855: OLJFJH_05855 - glycosyl transferase, at 1,181,986 to 1,183,089 _05855 OLJFJH_05860: OLJFJH_05860 - glycosyl transferase, at 1,183,102 to 1,184,082 _05860 OLJFJH_05865: OLJFJH_05865 - ligase, at 1,184,076 to 1,185,320 _05865 OLJFJH_05870: OLJFJH_05870 - lipopolysaccharide biosynthesis protein, at 1,185,340 to 1,186,506 _05870 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -3 -2 -1 0 1at 1183.096 kb on - strandat 1183.096 kb on - strandat 1183.141 kb on - strandat 1183.242 kb on + strand, within OLJFJH_05860at 1183.242 kb on + strand, within OLJFJH_05860at 1183.245 kb on - strand, within OLJFJH_05860at 1183.250 kb on + strand, within OLJFJH_05860at 1183.250 kb on + strand, within OLJFJH_05860at 1183.283 kb on - strand, within OLJFJH_05860at 1183.336 kb on - strand, within OLJFJH_05860at 1183.493 kb on + strand, within OLJFJH_05860at 1183.506 kb on + strand, within OLJFJH_05860at 1183.572 kb on - strand, within OLJFJH_05860at 1183.773 kb on - strand, within OLJFJH_05860at 1183.787 kb on - strand, within OLJFJH_05860at 1184.082 kb on + strandat 1184.083 kb on - strandat 1184.190 kb on + strandat 1184.345 kb on + strand, within OLJFJH_05865at 1184.345 kb on + strand, within OLJFJH_05865at 1184.346 kb on - strand, within OLJFJH_05865at 1184.346 kb on - strand, within OLJFJH_05865at 1184.374 kb on + strand, within OLJFJH_05865at 1184.374 kb on + strand, within OLJFJH_05865at 1184.375 kb on - strand, within OLJFJH_05865at 1184.532 kb on - strand, within OLJFJH_05865at 1184.554 kb on - strand, within OLJFJH_05865at 1184.577 kb on - strand, within OLJFJH_05865at 1184.634 kb on - strand, within OLJFJH_05865at 1184.648 kb on + strand, within OLJFJH_05865at 1184.748 kb on - strand, within OLJFJH_05865at 1184.762 kb on - strand, within OLJFJH_05865at 1184.810 kb on + strand, within OLJFJH_05865at 1184.811 kb on - strand, within OLJFJH_05865at 1184.836 kb on + strand, within OLJFJH_05865at 1184.837 kb on - strand, within OLJFJH_05865at 1184.912 kb on - strand, within OLJFJH_05865at 1185.035 kb on + strand, within OLJFJH_05865at 1185.048 kb on + strand, within OLJFJH_05865at 1185.048 kb on + strand, within OLJFJH_05865at 1185.058 kb on + strand, within OLJFJH_05865at 1185.058 kb on + strand, within OLJFJH_05865at 1185.059 kb on - strand, within OLJFJH_05865at 1185.158 kb on - strand, within OLJFJH_05865at 1185.208 kb on + strandat 1185.274 kb on + strandat 1185.342 kb on - strandat 1185.416 kb on + strandat 1185.436 kb on + strandat 1185.539 kb on + strand, within OLJFJH_05870at 1185.625 kb on + strand, within OLJFJH_05870at 1185.625 kb on + strand, within OLJFJH_05870at 1185.626 kb on - strand, within OLJFJH_05870at 1185.626 kb on - strand, within OLJFJH_05870at 1185.626 kb on - strand, within OLJFJH_05870at 1185.743 kb on + strand, within OLJFJH_05870at 1185.743 kb on + strand, within OLJFJH_05870at 1185.744 kb on - strand, within OLJFJH_05870at 1185.744 kb on - strand, within OLJFJH_05870at 1185.777 kb on + strand, within OLJFJH_05870at 1185.902 kb on - strand, within OLJFJH_05870at 1185.949 kb on + strand, within OLJFJH_05870at 1186.006 kb on + strand, within OLJFJH_05870at 1186.006 kb on + strand, within OLJFJH_05870at 1186.007 kb on - strand, within OLJFJH_05870at 1186.023 kb on + strand, within OLJFJH_05870at 1186.027 kb on - strand, within OLJFJH_05870at 1186.027 kb on - strand, within OLJFJH_05870at 1186.181 kb on + strand, within OLJFJH_05870at 1186.182 kb on - strand, within OLJFJH_05870at 1186.182 kb on - strand, within OLJFJH_05870at 1186.182 kb on - strand, within OLJFJH_05870at 1186.182 kb on - strand, within OLJFJH_05870at 1186.185 kb on - strand, within OLJFJH_05870

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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1,183,096 - +0.5
1,183,096 - -0.2
1,183,141 - +0.4
1,183,242 + OLJFJH_05860 0.14 -1.4
1,183,242 + OLJFJH_05860 0.14 -0.8
1,183,245 - OLJFJH_05860 0.15 -0.3
1,183,250 + OLJFJH_05860 0.15 -0.8
1,183,250 + OLJFJH_05860 0.15 -0.3
1,183,283 - OLJFJH_05860 0.18 -0.0
1,183,336 - OLJFJH_05860 0.24 +0.6
1,183,493 + OLJFJH_05860 0.40 +0.6
1,183,506 + OLJFJH_05860 0.41 -0.7
1,183,572 - OLJFJH_05860 0.48 +0.3
1,183,773 - OLJFJH_05860 0.68 -0.8
1,183,787 - OLJFJH_05860 0.70 -0.4
1,184,082 + -1.4
1,184,083 - -0.2
1,184,190 + -0.3
1,184,345 + OLJFJH_05865 0.22 -0.7
1,184,345 + OLJFJH_05865 0.22 -1.1
1,184,346 - OLJFJH_05865 0.22 -0.2
1,184,346 - OLJFJH_05865 0.22 -0.2
1,184,374 + OLJFJH_05865 0.24 -1.7
1,184,374 + OLJFJH_05865 0.24 +0.4
1,184,375 - OLJFJH_05865 0.24 -1.1
1,184,532 - OLJFJH_05865 0.37 -0.0
1,184,554 - OLJFJH_05865 0.38 -0.4
1,184,577 - OLJFJH_05865 0.40 -0.9
1,184,634 - OLJFJH_05865 0.45 -0.5
1,184,648 + OLJFJH_05865 0.46 -1.3
1,184,748 - OLJFJH_05865 0.54 -1.3
1,184,762 - OLJFJH_05865 0.55 -0.3
1,184,810 + OLJFJH_05865 0.59 -1.2
1,184,811 - OLJFJH_05865 0.59 -1.0
1,184,836 + OLJFJH_05865 0.61 -0.5
1,184,837 - OLJFJH_05865 0.61 -0.7
1,184,912 - OLJFJH_05865 0.67 -1.0
1,185,035 + OLJFJH_05865 0.77 -1.7
1,185,048 + OLJFJH_05865 0.78 -0.8
1,185,048 + OLJFJH_05865 0.78 +0.3
1,185,058 + OLJFJH_05865 0.79 -0.3
1,185,058 + OLJFJH_05865 0.79 -0.6
1,185,059 - OLJFJH_05865 0.79 +0.0
1,185,158 - OLJFJH_05865 0.87 -0.9
1,185,208 + -0.4
1,185,274 + -0.3
1,185,342 - +0.4
1,185,416 + -1.9
1,185,436 + -0.4
1,185,539 + OLJFJH_05870 0.17 -1.4
1,185,625 + OLJFJH_05870 0.24 -0.9
1,185,625 + OLJFJH_05870 0.24 -1.2
1,185,626 - OLJFJH_05870 0.25 -0.3
1,185,626 - OLJFJH_05870 0.25 -1.1
1,185,626 - OLJFJH_05870 0.25 -0.9
1,185,743 + OLJFJH_05870 0.35 -0.7
1,185,743 + OLJFJH_05870 0.35 +0.3
1,185,744 - OLJFJH_05870 0.35 -1.1
1,185,744 - OLJFJH_05870 0.35 -0.8
1,185,777 + OLJFJH_05870 0.37 +0.3
1,185,902 - OLJFJH_05870 0.48 -0.4
1,185,949 + OLJFJH_05870 0.52 -1.8
1,186,006 + OLJFJH_05870 0.57 -0.7
1,186,006 + OLJFJH_05870 0.57 -3.0
1,186,007 - OLJFJH_05870 0.57 +0.1
1,186,023 + OLJFJH_05870 0.59 +0.5
1,186,027 - OLJFJH_05870 0.59 -1.4
1,186,027 - OLJFJH_05870 0.59 -3.1
1,186,181 + OLJFJH_05870 0.72 -0.1
1,186,182 - OLJFJH_05870 0.72 -1.4
1,186,182 - OLJFJH_05870 0.72 -1.6
1,186,182 - OLJFJH_05870 0.72 -0.7
1,186,182 - OLJFJH_05870 0.72 -1.1
1,186,185 - OLJFJH_05870 0.72 -2.3

Or see this region's nucleotide sequence