Strain Fitness in Erwinia amylovora T8 around OLJFJH_04160

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04155 and OLJFJH_04160 overlap by 4 nucleotidesOLJFJH_04160 and OLJFJH_04165 are separated by 157 nucleotidesOLJFJH_04165 and OLJFJH_04170 are separated by 128 nucleotides OLJFJH_04155: OLJFJH_04155 - two-component system sensor histidine kinase EnvZ, at 792,155 to 793,504 _04155 OLJFJH_04160: OLJFJH_04160 - two-component system response regulator OmpR, at 793,501 to 794,352 _04160 OLJFJH_04165: OLJFJH_04165 - transcription elongation factor GreB, at 794,510 to 794,989 _04165 OLJFJH_04170: OLJFJH_04170 - RNA-binding transcriptional accessory protein, at 795,118 to 797,451 _04170 Position (kb) 793 794 795Strain fitness (log2 ratio) -2 -1 0 1at 792.882 kb on + strand, within OLJFJH_04155at 793.237 kb on + strand, within OLJFJH_04155at 793.238 kb on - strand, within OLJFJH_04155at 793.238 kb on - strand, within OLJFJH_04155at 793.238 kb on - strand, within OLJFJH_04155at 793.239 kb on + strand, within OLJFJH_04155at 793.240 kb on - strand, within OLJFJH_04155at 793.254 kb on - strand, within OLJFJH_04155at 793.263 kb on + strand, within OLJFJH_04155at 793.462 kb on + strandat 793.463 kb on - strandat 793.477 kb on + strandat 793.557 kb on + strandat 793.559 kb on + strandat 793.641 kb on - strand, within OLJFJH_04160at 793.702 kb on + strand, within OLJFJH_04160at 793.797 kb on + strand, within OLJFJH_04160at 793.797 kb on + strand, within OLJFJH_04160at 793.916 kb on + strand, within OLJFJH_04160at 793.916 kb on + strand, within OLJFJH_04160at 793.916 kb on + strand, within OLJFJH_04160at 793.917 kb on - strand, within OLJFJH_04160at 793.917 kb on - strand, within OLJFJH_04160at 793.917 kb on - strand, within OLJFJH_04160at 793.980 kb on + strand, within OLJFJH_04160at 794.299 kb on + strandat 794.299 kb on + strandat 794.300 kb on - strandat 794.300 kb on - strandat 794.301 kb on + strandat 794.302 kb on - strandat 794.331 kb on + strandat 794.343 kb on + strandat 794.344 kb on - strandat 794.432 kb on + strandat 794.432 kb on + strandat 794.652 kb on - strand, within OLJFJH_04165at 794.657 kb on + strand, within OLJFJH_04165at 794.788 kb on - strand, within OLJFJH_04165at 794.858 kb on + strand, within OLJFJH_04165at 794.858 kb on + strand, within OLJFJH_04165at 794.858 kb on + strand, within OLJFJH_04165at 794.859 kb on - strand, within OLJFJH_04165at 794.859 kb on - strand, within OLJFJH_04165at 794.859 kb on - strand, within OLJFJH_04165at 794.860 kb on + strand, within OLJFJH_04165at 794.860 kb on + strand, within OLJFJH_04165at 794.860 kb on + strand, within OLJFJH_04165at 794.860 kb on + strand, within OLJFJH_04165at 794.860 kb on + strand, within OLJFJH_04165at 794.861 kb on - strand, within OLJFJH_04165at 794.861 kb on - strand, within OLJFJH_04165at 794.861 kb on - strand, within OLJFJH_04165at 794.861 kb on - strand, within OLJFJH_04165at 794.861 kb on - strand, within OLJFJH_04165at 794.861 kb on - strand, within OLJFJH_04165at 794.861 kb on - strand, within OLJFJH_04165at 794.861 kb on - strand, within OLJFJH_04165at 794.861 kb on - strand, within OLJFJH_04165at 794.861 kb on - strand, within OLJFJH_04165at 794.955 kb on - strandat 794.973 kb on - strandat 794.973 kb on - strandat 794.973 kb on - strandat 795.109 kb on + strandat 795.110 kb on - strandat 795.110 kb on - strandat 795.114 kb on - strandat 795.114 kb on - strandat 795.261 kb on - strandat 795.301 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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792,882 + OLJFJH_04155 0.54 +0.9
793,237 + OLJFJH_04155 0.80 -0.1
793,238 - OLJFJH_04155 0.80 -0.4
793,238 - OLJFJH_04155 0.80 -0.9
793,238 - OLJFJH_04155 0.80 +0.5
793,239 + OLJFJH_04155 0.80 -2.1
793,240 - OLJFJH_04155 0.80 +0.3
793,254 - OLJFJH_04155 0.81 -0.0
793,263 + OLJFJH_04155 0.82 -0.8
793,462 + -1.1
793,463 - -0.7
793,477 + +0.3
793,557 + +0.0
793,559 + +0.7
793,641 - OLJFJH_04160 0.16 -0.3
793,702 + OLJFJH_04160 0.24 -0.9
793,797 + OLJFJH_04160 0.35 +0.3
793,797 + OLJFJH_04160 0.35 -1.2
793,916 + OLJFJH_04160 0.49 -0.4
793,916 + OLJFJH_04160 0.49 -0.9
793,916 + OLJFJH_04160 0.49 -0.6
793,917 - OLJFJH_04160 0.49 +1.6
793,917 - OLJFJH_04160 0.49 -0.4
793,917 - OLJFJH_04160 0.49 -0.9
793,980 + OLJFJH_04160 0.56 +0.3
794,299 + +0.1
794,299 + -0.0
794,300 - -0.3
794,300 - -2.1
794,301 + -0.0
794,302 - +0.3
794,331 + +0.2
794,343 + -0.1
794,344 - -0.8
794,432 + +0.1
794,432 + +1.2
794,652 - OLJFJH_04165 0.30 +0.3
794,657 + OLJFJH_04165 0.31 -0.1
794,788 - OLJFJH_04165 0.58 -0.0
794,858 + OLJFJH_04165 0.72 -0.2
794,858 + OLJFJH_04165 0.72 +0.0
794,858 + OLJFJH_04165 0.72 +0.1
794,859 - OLJFJH_04165 0.73 +0.3
794,859 - OLJFJH_04165 0.73 -0.3
794,859 - OLJFJH_04165 0.73 +0.4
794,860 + OLJFJH_04165 0.73 -0.1
794,860 + OLJFJH_04165 0.73 +0.4
794,860 + OLJFJH_04165 0.73 -0.3
794,860 + OLJFJH_04165 0.73 -0.1
794,860 + OLJFJH_04165 0.73 -0.2
794,861 - OLJFJH_04165 0.73 -0.1
794,861 - OLJFJH_04165 0.73 +0.1
794,861 - OLJFJH_04165 0.73 -0.8
794,861 - OLJFJH_04165 0.73 -0.1
794,861 - OLJFJH_04165 0.73 -0.7
794,861 - OLJFJH_04165 0.73 +0.2
794,861 - OLJFJH_04165 0.73 +0.3
794,861 - OLJFJH_04165 0.73 +0.6
794,861 - OLJFJH_04165 0.73 -1.0
794,861 - OLJFJH_04165 0.73 -0.4
794,955 - -0.4
794,973 - -1.4
794,973 - +0.1
794,973 - -0.1
795,109 + +0.0
795,110 - +0.1
795,110 - -0.2
795,114 - -0.7
795,114 - -0.1
795,261 - +0.2
795,301 + -0.2

Or see this region's nucleotide sequence