Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04070 and OLJFJH_04075 overlap by 17 nucleotides OLJFJH_04075 and OLJFJH_04080 are separated by 37 nucleotides OLJFJH_04080 and OLJFJH_04085 are separated by 119 nucleotides
OLJFJH_04070: OLJFJH_04070 - phosphoglycolate phosphatase, at 773,869 to 774,570
_04070
OLJFJH_04075: OLJFJH_04075 - ribulose-phosphate 3-epimerase, at 774,554 to 775,240
_04075
OLJFJH_04080: OLJFJH_04080 - adenine-specific DNA-methyltransferase, at 775,278 to 776,099
_04080
OLJFJH_04085: OLJFJH_04085 - cell division protein DamX, at 776,219 to 777,175
_04085
Position (kb) 775
776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 774.315 kb on - strand, within OLJFJH_04070 at 774.349 kb on + strand, within OLJFJH_04070 at 774.406 kb on - strand, within OLJFJH_04070 at 774.406 kb on - strand, within OLJFJH_04070 at 774.406 kb on - strand, within OLJFJH_04070 at 775.292 kb on - strand at 775.292 kb on - strand at 775.292 kb on - strand at 775.292 kb on - strand at 775.434 kb on - strand, within OLJFJH_04080 at 775.675 kb on + strand, within OLJFJH_04080 at 775.744 kb on + strand, within OLJFJH_04080 at 775.745 kb on - strand, within OLJFJH_04080 at 775.745 kb on - strand, within OLJFJH_04080 at 775.757 kb on + strand, within OLJFJH_04080 at 775.763 kb on - strand, within OLJFJH_04080 at 775.764 kb on + strand, within OLJFJH_04080 at 775.825 kb on + strand, within OLJFJH_04080 at 775.825 kb on + strand, within OLJFJH_04080 at 775.829 kb on - strand, within OLJFJH_04080 at 775.829 kb on - strand, within OLJFJH_04080 at 775.829 kb on - strand, within OLJFJH_04080 at 775.949 kb on + strand, within OLJFJH_04080 at 775.951 kb on + strand, within OLJFJH_04080 at 775.952 kb on - strand, within OLJFJH_04080 at 776.057 kb on - strand at 776.060 kb on + strand at 776.060 kb on + strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.112 kb on + strand at 776.112 kb on + strand at 776.112 kb on + strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.117 kb on - strand at 776.117 kb on - strand at 776.117 kb on - strand at 776.117 kb on - strand at 776.147 kb on + strand at 776.147 kb on + strand at 776.147 kb on + strand at 776.147 kb on + strand at 776.148 kb on - strand at 776.148 kb on - strand at 776.148 kb on - strand at 776.159 kb on - strand at 776.220 kb on + strand at 776.279 kb on + strand at 776.279 kb on + strand at 776.279 kb on + strand at 776.279 kb on + strand at 776.331 kb on + strand, within OLJFJH_04085 at 776.352 kb on + strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.383 kb on - strand, within OLJFJH_04085 at 776.483 kb on - strand, within OLJFJH_04085 at 776.483 kb on - strand, within OLJFJH_04085 at 776.832 kb on - strand, within OLJFJH_04085 at 776.941 kb on + strand, within OLJFJH_04085 at 777.064 kb on + strand, within OLJFJH_04085 at 777.065 kb on - strand, within OLJFJH_04085 at 777.065 kb on - strand, within OLJFJH_04085 at 777.065 kb on - strand, within OLJFJH_04085
Per-strain Table
Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1) remove 774,315 - OLJFJH_04070 0.64 -0.4 774,349 + OLJFJH_04070 0.68 -0.1 774,406 - OLJFJH_04070 0.76 +0.3 774,406 - OLJFJH_04070 0.76 +0.0 774,406 - OLJFJH_04070 0.76 +0.2 775,292 - -1.9 775,292 - -0.7 775,292 - -1.7 775,292 - -0.7 775,434 - OLJFJH_04080 0.19 -0.7 775,675 + OLJFJH_04080 0.48 -2.4 775,744 + OLJFJH_04080 0.57 -2.3 775,745 - OLJFJH_04080 0.57 -0.9 775,745 - OLJFJH_04080 0.57 -0.1 775,757 + OLJFJH_04080 0.58 -1.3 775,763 - OLJFJH_04080 0.59 -1.1 775,764 + OLJFJH_04080 0.59 -0.7 775,825 + OLJFJH_04080 0.67 -2.4 775,825 + OLJFJH_04080 0.67 -1.7 775,829 - OLJFJH_04080 0.67 -1.9 775,829 - OLJFJH_04080 0.67 -2.1 775,829 - OLJFJH_04080 0.67 -1.9 775,949 + OLJFJH_04080 0.82 -0.7 775,951 + OLJFJH_04080 0.82 -0.9 775,952 - OLJFJH_04080 0.82 -1.1 776,057 - -0.9 776,060 + -1.9 776,060 + -0.6 776,061 - -0.4 776,061 - -0.5 776,061 - -1.4 776,061 - -1.2 776,061 - -0.1 776,112 + -0.7 776,112 + -0.6 776,112 + -1.7 776,113 - -0.1 776,113 - +0.3 776,113 - -0.1 776,113 - +0.1 776,113 - +0.5 776,113 - +0.5 776,117 - -0.3 776,117 - +0.0 776,117 - -0.3 776,117 - -1.3 776,147 + -1.0 776,147 + -1.1 776,147 + -1.6 776,147 + -1.9 776,148 - +0.3 776,148 - -0.0 776,148 - -0.4 776,159 - -0.6 776,220 + -0.1 776,279 + -2.4 776,279 + -1.7 776,279 + -3.4 776,279 + -1.9 776,331 + OLJFJH_04085 0.12 -0.1 776,352 + OLJFJH_04085 0.14 -0.1 776,353 - OLJFJH_04085 0.14 -0.0 776,353 - OLJFJH_04085 0.14 -0.4 776,353 - OLJFJH_04085 0.14 +0.2 776,353 - OLJFJH_04085 0.14 +0.4 776,383 - OLJFJH_04085 0.17 -0.2 776,483 - OLJFJH_04085 0.28 -0.5 776,483 - OLJFJH_04085 0.28 -0.3 776,832 - OLJFJH_04085 0.64 -1.7 776,941 + OLJFJH_04085 0.75 -2.3 777,064 + OLJFJH_04085 0.88 -1.1 777,065 - OLJFJH_04085 0.88 -0.9 777,065 - OLJFJH_04085 0.88 -1.1 777,065 - OLJFJH_04085 0.88 -1.4
Or see this region's nucleotide sequence