Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03560 and OLJFJH_03565 are separated by 474 nucleotides OLJFJH_03565 and OLJFJH_03570 are separated by 81 nucleotides OLJFJH_03570 and OLJFJH_03575 are separated by 213 nucleotides
OLJFJH_03560: OLJFJH_03560 - conjugal transfer protein TraF, at 686,353 to 687,585
_03560
OLJFJH_03565: OLJFJH_03565 - zinc uptake transcriptional repressor Zur, at 688,060 to 688,569
_03565
OLJFJH_03570: OLJFJH_03570 - CsbD domain-containing protein, at 688,651 to 688,860
_03570
OLJFJH_03575: OLJFJH_03575 - MATE family efflux transporter DinF, at 689,074 to 690,396
_03575
Position (kb) 688
689 Strain fitness (log2 ratio) -1
0
1 at 687.076 kb on - strand, within OLJFJH_03560 at 687.108 kb on + strand, within OLJFJH_03560 at 687.108 kb on + strand, within OLJFJH_03560 at 687.108 kb on + strand, within OLJFJH_03560 at 687.282 kb on - strand, within OLJFJH_03560 at 687.366 kb on + strand, within OLJFJH_03560 at 687.366 kb on + strand, within OLJFJH_03560 at 687.367 kb on - strand, within OLJFJH_03560 at 687.434 kb on + strand, within OLJFJH_03560 at 687.434 kb on + strand, within OLJFJH_03560 at 687.489 kb on - strand at 687.489 kb on - strand at 687.662 kb on + strand at 687.663 kb on - strand at 687.718 kb on - strand at 687.739 kb on + strand at 687.739 kb on + strand at 687.775 kb on - strand at 687.903 kb on - strand at 687.939 kb on - strand at 688.055 kb on + strand at 688.056 kb on - strand at 688.203 kb on - strand, within OLJFJH_03565 at 688.278 kb on + strand, within OLJFJH_03565 at 688.302 kb on + strand, within OLJFJH_03565 at 688.306 kb on + strand, within OLJFJH_03565 at 688.306 kb on + strand, within OLJFJH_03565 at 688.306 kb on + strand, within OLJFJH_03565 at 688.307 kb on - strand, within OLJFJH_03565 at 688.307 kb on - strand, within OLJFJH_03565 at 688.307 kb on - strand, within OLJFJH_03565 at 688.341 kb on + strand, within OLJFJH_03565 at 688.341 kb on + strand, within OLJFJH_03565 at 688.342 kb on - strand, within OLJFJH_03565 at 688.358 kb on + strand, within OLJFJH_03565 at 688.410 kb on + strand, within OLJFJH_03565 at 688.411 kb on - strand, within OLJFJH_03565 at 688.411 kb on - strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.499 kb on + strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.510 kb on - strand, within OLJFJH_03565 at 688.652 kb on + strand at 688.810 kb on - strand, within OLJFJH_03570 at 688.816 kb on - strand, within OLJFJH_03570 at 688.860 kb on + strand at 688.864 kb on - strand at 688.864 kb on - strand at 688.864 kb on - strand at 688.864 kb on - strand at 688.864 kb on - strand at 688.864 kb on - strand at 688.875 kb on - strand at 688.915 kb on + strand at 688.915 kb on + strand at 688.915 kb on + strand at 688.929 kb on + strand at 688.956 kb on + strand at 688.962 kb on + strand at 688.963 kb on - strand at 689.066 kb on - strand at 689.116 kb on + strand at 689.148 kb on + strand at 689.238 kb on + strand, within OLJFJH_03575 at 689.294 kb on + strand, within OLJFJH_03575 at 689.468 kb on - strand, within OLJFJH_03575 at 689.565 kb on + strand, within OLJFJH_03575
Per-strain Table
Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1) remove 687,076 - OLJFJH_03560 0.59 -0.1 687,108 + OLJFJH_03560 0.61 +0.2 687,108 + OLJFJH_03560 0.61 +0.5 687,108 + OLJFJH_03560 0.61 -0.2 687,282 - OLJFJH_03560 0.75 -0.2 687,366 + OLJFJH_03560 0.82 +0.2 687,366 + OLJFJH_03560 0.82 -0.1 687,367 - OLJFJH_03560 0.82 -0.0 687,434 + OLJFJH_03560 0.88 -0.1 687,434 + OLJFJH_03560 0.88 +0.1 687,489 - +0.1 687,489 - +0.1 687,662 + +0.9 687,663 - +0.0 687,718 - -0.1 687,739 + +0.5 687,739 + -0.3 687,775 - +0.2 687,903 - -0.1 687,939 - -0.1 688,055 + -0.5 688,056 - +0.5 688,203 - OLJFJH_03565 0.28 -0.3 688,278 + OLJFJH_03565 0.43 -0.3 688,302 + OLJFJH_03565 0.47 -0.6 688,306 + OLJFJH_03565 0.48 +0.1 688,306 + OLJFJH_03565 0.48 -0.5 688,306 + OLJFJH_03565 0.48 -0.6 688,307 - OLJFJH_03565 0.48 -0.2 688,307 - OLJFJH_03565 0.48 -0.5 688,307 - OLJFJH_03565 0.48 -0.7 688,341 + OLJFJH_03565 0.55 +0.2 688,341 + OLJFJH_03565 0.55 -0.1 688,342 - OLJFJH_03565 0.55 -0.8 688,358 + OLJFJH_03565 0.58 -0.4 688,410 + OLJFJH_03565 0.69 -1.5 688,411 - OLJFJH_03565 0.69 -0.1 688,411 - OLJFJH_03565 0.69 +0.1 688,412 + OLJFJH_03565 0.69 -0.6 688,412 + OLJFJH_03565 0.69 -0.4 688,412 + OLJFJH_03565 0.69 -0.6 688,412 + OLJFJH_03565 0.69 -0.4 688,499 + OLJFJH_03565 0.86 -0.1 688,500 - OLJFJH_03565 0.86 +0.2 688,500 - OLJFJH_03565 0.86 -0.2 688,500 - OLJFJH_03565 0.86 -0.1 688,500 - OLJFJH_03565 0.86 -0.4 688,500 - OLJFJH_03565 0.86 +0.2 688,500 - OLJFJH_03565 0.86 +0.3 688,500 - OLJFJH_03565 0.86 -0.4 688,510 - OLJFJH_03565 0.88 -0.7 688,652 + -0.2 688,810 - OLJFJH_03570 0.76 -0.1 688,816 - OLJFJH_03570 0.79 -0.1 688,860 + -0.7 688,864 - -0.0 688,864 - +0.3 688,864 - +0.0 688,864 - -0.1 688,864 - -0.5 688,864 - -0.7 688,875 - -0.6 688,915 + +0.0 688,915 + +0.3 688,915 + -0.2 688,929 + +0.0 688,956 + +0.4 688,962 + +0.1 688,963 - +0.5 689,066 - +0.8 689,116 + -0.4 689,148 + +0.5 689,238 + OLJFJH_03575 0.12 +0.3 689,294 + OLJFJH_03575 0.17 -0.6 689,468 - OLJFJH_03575 0.30 -0.1 689,565 + OLJFJH_03575 0.37 +0.2
Or see this region's nucleotide sequence