Strain Fitness in Erwinia amylovora T8 around OLJFJH_03350

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03345 and OLJFJH_03350 are separated by 61 nucleotidesOLJFJH_03350 and OLJFJH_03355 are separated by 140 nucleotidesOLJFJH_03355 and OLJFJH_03360 overlap by 8 nucleotides OLJFJH_03345: OLJFJH_03345 - Cation/acetate symporter ActP, at 639,226 to 640,884 _03345 OLJFJH_03350: OLJFJH_03350 - porin, at 640,946 to 641,491 _03350 OLJFJH_03355: OLJFJH_03355 - murein hydrolase effector protein LrgB, at 641,632 to 642,330 _03355 OLJFJH_03360: OLJFJH_03360 - murein hydrolase regulator LrgA, at 642,323 to 642,751 _03360 Position (kb) 640 641 642Strain fitness (log2 ratio) -2 -1 0 1at 640.054 kb on - strand, within OLJFJH_03345at 640.129 kb on + strand, within OLJFJH_03345at 640.129 kb on + strand, within OLJFJH_03345at 640.129 kb on + strand, within OLJFJH_03345at 640.129 kb on + strand, within OLJFJH_03345at 640.129 kb on + strand, within OLJFJH_03345at 640.130 kb on - strand, within OLJFJH_03345at 640.130 kb on - strand, within OLJFJH_03345at 640.130 kb on - strand, within OLJFJH_03345at 640.130 kb on - strand, within OLJFJH_03345at 640.130 kb on - strand, within OLJFJH_03345at 640.130 kb on - strand, within OLJFJH_03345at 640.157 kb on - strand, within OLJFJH_03345at 640.254 kb on + strand, within OLJFJH_03345at 640.254 kb on + strand, within OLJFJH_03345at 640.255 kb on - strand, within OLJFJH_03345at 640.308 kb on + strand, within OLJFJH_03345at 640.308 kb on + strand, within OLJFJH_03345at 640.308 kb on + strand, within OLJFJH_03345at 640.308 kb on + strand, within OLJFJH_03345at 640.308 kb on + strand, within OLJFJH_03345at 640.309 kb on - strand, within OLJFJH_03345at 640.309 kb on - strand, within OLJFJH_03345at 640.309 kb on - strand, within OLJFJH_03345at 640.310 kb on + strand, within OLJFJH_03345at 640.311 kb on - strand, within OLJFJH_03345at 640.311 kb on - strand, within OLJFJH_03345at 640.311 kb on - strand, within OLJFJH_03345at 640.474 kb on - strand, within OLJFJH_03345at 640.524 kb on + strand, within OLJFJH_03345at 640.545 kb on + strand, within OLJFJH_03345at 640.560 kb on + strand, within OLJFJH_03345at 640.588 kb on + strand, within OLJFJH_03345at 640.588 kb on + strand, within OLJFJH_03345at 640.589 kb on - strand, within OLJFJH_03345at 640.653 kb on + strand, within OLJFJH_03345at 640.720 kb on + strandat 640.839 kb on - strandat 640.882 kb on + strandat 640.882 kb on + strandat 640.882 kb on + strandat 640.882 kb on + strandat 640.882 kb on + strandat 640.925 kb on + strandat 640.944 kb on + strandat 640.945 kb on - strandat 641.028 kb on + strand, within OLJFJH_03350at 641.028 kb on + strand, within OLJFJH_03350at 641.028 kb on + strand, within OLJFJH_03350at 641.028 kb on + strand, within OLJFJH_03350at 641.028 kb on + strand, within OLJFJH_03350at 641.029 kb on - strand, within OLJFJH_03350at 641.029 kb on - strand, within OLJFJH_03350at 641.029 kb on - strand, within OLJFJH_03350at 641.029 kb on - strand, within OLJFJH_03350at 641.029 kb on - strand, within OLJFJH_03350at 641.029 kb on - strand, within OLJFJH_03350at 641.097 kb on + strand, within OLJFJH_03350at 641.097 kb on + strand, within OLJFJH_03350at 641.098 kb on - strand, within OLJFJH_03350at 641.098 kb on - strand, within OLJFJH_03350at 641.136 kb on + strand, within OLJFJH_03350at 641.136 kb on + strand, within OLJFJH_03350at 641.137 kb on - strand, within OLJFJH_03350at 641.156 kb on - strand, within OLJFJH_03350at 641.287 kb on - strand, within OLJFJH_03350at 641.363 kb on - strand, within OLJFJH_03350at 641.394 kb on + strand, within OLJFJH_03350at 641.511 kb on + strandat 641.511 kb on + strandat 641.512 kb on - strandat 641.516 kb on + strandat 641.516 kb on + strandat 641.555 kb on + strandat 641.565 kb on + strandat 641.565 kb on + strandat 641.565 kb on + strandat 641.567 kb on + strandat 641.588 kb on - strandat 641.596 kb on + strandat 641.597 kb on - strandat 641.601 kb on - strandat 641.605 kb on + strandat 641.605 kb on + strandat 641.612 kb on - strandat 641.612 kb on - strandat 641.612 kb on - strandat 641.624 kb on + strandat 641.625 kb on - strandat 641.625 kb on - strandat 641.653 kb on - strandat 641.653 kb on - strandat 641.653 kb on - strandat 641.866 kb on - strand, within OLJFJH_03355at 641.868 kb on + strand, within OLJFJH_03355at 641.905 kb on + strand, within OLJFJH_03355at 641.906 kb on - strand, within OLJFJH_03355at 642.092 kb on + strand, within OLJFJH_03355at 642.093 kb on - strand, within OLJFJH_03355at 642.094 kb on + strand, within OLJFJH_03355at 642.095 kb on - strand, within OLJFJH_03355at 642.160 kb on - strand, within OLJFJH_03355at 642.162 kb on - strand, within OLJFJH_03355at 642.162 kb on - strand, within OLJFJH_03355at 642.162 kb on - strand, within OLJFJH_03355at 642.188 kb on - strand, within OLJFJH_03355at 642.188 kb on - strand, within OLJFJH_03355at 642.267 kb on + strandat 642.267 kb on + strandat 642.268 kb on - strandat 642.278 kb on + strandat 642.279 kb on - strandat 642.279 kb on - strandat 642.459 kb on - strand, within OLJFJH_03360at 642.477 kb on + strand, within OLJFJH_03360at 642.478 kb on - strand, within OLJFJH_03360at 642.478 kb on - strand, within OLJFJH_03360at 642.478 kb on - strand, within OLJFJH_03360

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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640,054 - OLJFJH_03345 0.50 +0.0
640,129 + OLJFJH_03345 0.54 +0.2
640,129 + OLJFJH_03345 0.54 -0.4
640,129 + OLJFJH_03345 0.54 +0.1
640,129 + OLJFJH_03345 0.54 +0.2
640,129 + OLJFJH_03345 0.54 +0.7
640,130 - OLJFJH_03345 0.54 -0.2
640,130 - OLJFJH_03345 0.54 -0.4
640,130 - OLJFJH_03345 0.54 -0.1
640,130 - OLJFJH_03345 0.54 -0.3
640,130 - OLJFJH_03345 0.54 +0.6
640,130 - OLJFJH_03345 0.54 -0.3
640,157 - OLJFJH_03345 0.56 -0.1
640,254 + OLJFJH_03345 0.62 +0.4
640,254 + OLJFJH_03345 0.62 +0.2
640,255 - OLJFJH_03345 0.62 +0.0
640,308 + OLJFJH_03345 0.65 -1.1
640,308 + OLJFJH_03345 0.65 +0.4
640,308 + OLJFJH_03345 0.65 +0.2
640,308 + OLJFJH_03345 0.65 +0.5
640,308 + OLJFJH_03345 0.65 +0.2
640,309 - OLJFJH_03345 0.65 -0.1
640,309 - OLJFJH_03345 0.65 +0.3
640,309 - OLJFJH_03345 0.65 -0.1
640,310 + OLJFJH_03345 0.65 -0.1
640,311 - OLJFJH_03345 0.65 -1.7
640,311 - OLJFJH_03345 0.65 +0.3
640,311 - OLJFJH_03345 0.65 +0.7
640,474 - OLJFJH_03345 0.75 -0.3
640,524 + OLJFJH_03345 0.78 +0.7
640,545 + OLJFJH_03345 0.80 -0.1
640,560 + OLJFJH_03345 0.80 -0.0
640,588 + OLJFJH_03345 0.82 +0.2
640,588 + OLJFJH_03345 0.82 -1.4
640,589 - OLJFJH_03345 0.82 +0.1
640,653 + OLJFJH_03345 0.86 -0.3
640,720 + -0.0
640,839 - -0.1
640,882 + -0.7
640,882 + +1.3
640,882 + +0.2
640,882 + -0.3
640,882 + +0.5
640,925 + -0.1
640,944 + -0.1
640,945 - +0.4
641,028 + OLJFJH_03350 0.15 -0.8
641,028 + OLJFJH_03350 0.15 -0.5
641,028 + OLJFJH_03350 0.15 -0.3
641,028 + OLJFJH_03350 0.15 -0.3
641,028 + OLJFJH_03350 0.15 +0.5
641,029 - OLJFJH_03350 0.15 -0.3
641,029 - OLJFJH_03350 0.15 -0.7
641,029 - OLJFJH_03350 0.15 +0.1
641,029 - OLJFJH_03350 0.15 +0.1
641,029 - OLJFJH_03350 0.15 -0.2
641,029 - OLJFJH_03350 0.15 +0.9
641,097 + OLJFJH_03350 0.28 -0.1
641,097 + OLJFJH_03350 0.28 -0.1
641,098 - OLJFJH_03350 0.28 +0.1
641,098 - OLJFJH_03350 0.28 -0.0
641,136 + OLJFJH_03350 0.35 -0.2
641,136 + OLJFJH_03350 0.35 -0.9
641,137 - OLJFJH_03350 0.35 -0.1
641,156 - OLJFJH_03350 0.38 -0.1
641,287 - OLJFJH_03350 0.62 -0.3
641,363 - OLJFJH_03350 0.76 -0.4
641,394 + OLJFJH_03350 0.82 -1.0
641,511 + -0.1
641,511 + -0.1
641,512 - -1.1
641,516 + -0.3
641,516 + +0.1
641,555 + +0.5
641,565 + -0.2
641,565 + +0.4
641,565 + +0.1
641,567 + -0.2
641,588 - -1.5
641,596 + +0.0
641,597 - -0.0
641,601 - +0.4
641,605 + +0.1
641,605 + +0.1
641,612 - -0.1
641,612 - -0.0
641,612 - +0.2
641,624 + +0.1
641,625 - -0.2
641,625 - +0.9
641,653 - +0.2
641,653 - -0.1
641,653 - +0.5
641,866 - OLJFJH_03355 0.33 -0.9
641,868 + OLJFJH_03355 0.34 -0.1
641,905 + OLJFJH_03355 0.39 -0.3
641,906 - OLJFJH_03355 0.39 +0.7
642,092 + OLJFJH_03355 0.66 -0.3
642,093 - OLJFJH_03355 0.66 +0.4
642,094 + OLJFJH_03355 0.66 -0.5
642,095 - OLJFJH_03355 0.66 -1.9
642,160 - OLJFJH_03355 0.76 +1.2
642,162 - OLJFJH_03355 0.76 +0.2
642,162 - OLJFJH_03355 0.76 +0.7
642,162 - OLJFJH_03355 0.76 +0.3
642,188 - OLJFJH_03355 0.80 +0.0
642,188 - OLJFJH_03355 0.80 +0.6
642,267 + +0.2
642,267 + +0.6
642,268 - +0.2
642,278 + +0.4
642,279 - -0.7
642,279 - -0.2
642,459 - OLJFJH_03360 0.32 +0.3
642,477 + OLJFJH_03360 0.36 -0.1
642,478 - OLJFJH_03360 0.36 +0.1
642,478 - OLJFJH_03360 0.36 +0.0
642,478 - OLJFJH_03360 0.36 +0.2

Or see this region's nucleotide sequence