Strain Fitness in Erwinia amylovora T8 around OLJFJH_02365

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02355 and OLJFJH_02360 are separated by 161 nucleotidesOLJFJH_02360 and OLJFJH_02365 are separated by 99 nucleotidesOLJFJH_02365 and OLJFJH_02370 are separated by 172 nucleotides OLJFJH_02355: OLJFJH_02355 - metalloprotease PmbA, at 415,302 to 416,642 _02355 OLJFJH_02360: OLJFJH_02360 - ribosome-associated protein, at 416,804 to 417,346 _02360 OLJFJH_02365: OLJFJH_02365 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 417,446 to 418,798 _02365 OLJFJH_02370: OLJFJH_02370 - class 1 fructose-bisphosphatase, at 418,971 to 419,969 _02370 Position (kb) 417 418 419Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 416.609 kb on + strandat 416.610 kb on - strandat 416.610 kb on - strandat 416.610 kb on - strandat 416.635 kb on - strandat 416.653 kb on + strandat 416.654 kb on - strandat 416.654 kb on - strandat 416.655 kb on + strandat 416.655 kb on + strandat 416.655 kb on + strandat 416.655 kb on + strandat 416.656 kb on - strandat 416.656 kb on - strandat 416.656 kb on - strandat 416.656 kb on - strandat 416.684 kb on + strandat 416.714 kb on + strandat 416.731 kb on - strandat 416.779 kb on + strandat 417.514 kb on + strandat 417.514 kb on + strandat 417.514 kb on + strandat 417.515 kb on - strandat 417.515 kb on - strandat 417.556 kb on + strandat 417.556 kb on + strandat 417.557 kb on - strandat 417.709 kb on + strand, within OLJFJH_02365at 417.740 kb on - strand, within OLJFJH_02365at 417.755 kb on + strand, within OLJFJH_02365at 418.049 kb on - strand, within OLJFJH_02365at 418.218 kb on + strand, within OLJFJH_02365at 418.218 kb on + strand, within OLJFJH_02365at 418.218 kb on + strand, within OLJFJH_02365at 418.219 kb on - strand, within OLJFJH_02365at 418.328 kb on + strand, within OLJFJH_02365at 418.329 kb on - strand, within OLJFJH_02365at 418.329 kb on - strand, within OLJFJH_02365at 418.331 kb on + strand, within OLJFJH_02365at 418.515 kb on - strand, within OLJFJH_02365at 418.543 kb on + strand, within OLJFJH_02365at 418.787 kb on - strandat 418.798 kb on + strandat 418.798 kb on + strandat 418.828 kb on + strandat 418.829 kb on - strandat 418.834 kb on - strandat 418.881 kb on + strandat 418.914 kb on + strandat 418.914 kb on + strandat 418.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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416,609 + -0.1
416,610 - -0.6
416,610 - -0.2
416,610 - -0.1
416,635 - -0.7
416,653 + -0.2
416,654 - +0.2
416,654 - +0.1
416,655 + -0.4
416,655 + +0.4
416,655 + -0.4
416,655 + -0.2
416,656 - -0.3
416,656 - +0.2
416,656 - +0.3
416,656 - -0.6
416,684 + -1.0
416,714 + -0.8
416,731 - -0.6
416,779 + -0.6
417,514 + -0.6
417,514 + -3.4
417,514 + -2.8
417,515 - -2.2
417,515 - -1.4
417,556 + -3.7
417,556 + -3.7
417,557 - -3.1
417,709 + OLJFJH_02365 0.19 -2.6
417,740 - OLJFJH_02365 0.22 -3.6
417,755 + OLJFJH_02365 0.23 -1.9
418,049 - OLJFJH_02365 0.45 -2.1
418,218 + OLJFJH_02365 0.57 -5.2
418,218 + OLJFJH_02365 0.57 -3.5
418,218 + OLJFJH_02365 0.57 -1.1
418,219 - OLJFJH_02365 0.57 -3.7
418,328 + OLJFJH_02365 0.65 -3.3
418,329 - OLJFJH_02365 0.65 -4.1
418,329 - OLJFJH_02365 0.65 -5.2
418,331 + OLJFJH_02365 0.65 -2.2
418,515 - OLJFJH_02365 0.79 -2.4
418,543 + OLJFJH_02365 0.81 -2.6
418,787 - -1.4
418,798 + -3.9
418,798 + -3.4
418,828 + -4.5
418,829 - +0.1
418,834 - -0.3
418,881 + -0.1
418,914 + -0.1
418,914 + -0.5
418,914 + -0.1

Or see this region's nucleotide sequence