Strain Fitness in Erwinia amylovora T8 around OLJFJH_02090

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_02080 and OLJFJH_02085 are separated by 92 nucleotidesOLJFJH_02085 and OLJFJH_02090 are separated by 47 nucleotidesOLJFJH_02090 and OLJFJH_02095 are separated by 14 nucleotidesOLJFJH_02095 and OLJFJH_02100 are separated by 14 nucleotides OLJFJH_02080: OLJFJH_02080 - DNA-binding transcriptional repressor, at 366,357 to 367,124 _02080 OLJFJH_02085: OLJFJH_02085 - transcriptional regulator GutM, at 367,217 to 367,579 _02085 OLJFJH_02090: OLJFJH_02090 - sorbitol-6-phosphate dehydrogenase, at 367,627 to 368,406 _02090 OLJFJH_02095: OLJFJH_02095 - PTS glucitol/sorbitol transporter subunit IIA, at 368,421 to 368,789 _02095 OLJFJH_02100: OLJFJH_02100 - PTS system glucitol/sorbitol-specific EIIB component, at 368,804 to 369,805 _02100 Position (kb) 367 368 369Strain fitness (log2 ratio) -2 -1 0 1at 366.799 kb on + strand, within OLJFJH_02080at 366.950 kb on + strand, within OLJFJH_02080at 366.967 kb on + strand, within OLJFJH_02080at 366.968 kb on - strand, within OLJFJH_02080at 367.034 kb on + strand, within OLJFJH_02080at 367.060 kb on - strandat 367.152 kb on - strandat 367.152 kb on - strandat 367.196 kb on + strandat 367.280 kb on + strand, within OLJFJH_02085at 367.280 kb on + strand, within OLJFJH_02085at 367.521 kb on - strand, within OLJFJH_02085at 367.532 kb on + strand, within OLJFJH_02085at 367.565 kb on - strandat 367.579 kb on + strandat 367.579 kb on + strandat 367.717 kb on + strand, within OLJFJH_02090at 367.717 kb on + strand, within OLJFJH_02090at 367.717 kb on + strand, within OLJFJH_02090at 367.717 kb on + strand, within OLJFJH_02090at 367.764 kb on - strand, within OLJFJH_02090at 367.764 kb on - strand, within OLJFJH_02090at 367.808 kb on + strand, within OLJFJH_02090at 367.842 kb on + strand, within OLJFJH_02090at 367.842 kb on + strand, within OLJFJH_02090at 367.843 kb on - strand, within OLJFJH_02090at 367.843 kb on - strand, within OLJFJH_02090at 367.870 kb on + strand, within OLJFJH_02090at 367.870 kb on + strand, within OLJFJH_02090at 367.871 kb on - strand, within OLJFJH_02090at 367.878 kb on + strand, within OLJFJH_02090at 367.879 kb on - strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.957 kb on - strand, within OLJFJH_02090at 367.957 kb on - strand, within OLJFJH_02090at 367.983 kb on + strand, within OLJFJH_02090at 368.118 kb on + strand, within OLJFJH_02090at 368.147 kb on + strand, within OLJFJH_02090at 368.147 kb on + strand, within OLJFJH_02090at 368.183 kb on - strand, within OLJFJH_02090at 368.274 kb on + strand, within OLJFJH_02090at 368.275 kb on - strand, within OLJFJH_02090at 368.390 kb on - strandat 368.390 kb on - strandat 368.482 kb on - strand, within OLJFJH_02095at 368.537 kb on + strand, within OLJFJH_02095at 368.538 kb on - strand, within OLJFJH_02095at 368.538 kb on - strand, within OLJFJH_02095at 368.634 kb on + strand, within OLJFJH_02095at 368.635 kb on - strand, within OLJFJH_02095at 368.635 kb on - strand, within OLJFJH_02095at 368.649 kb on - strand, within OLJFJH_02095at 368.750 kb on + strand, within OLJFJH_02095at 368.750 kb on + strand, within OLJFJH_02095at 368.776 kb on + strandat 368.811 kb on + strandat 368.901 kb on - strandat 369.020 kb on + strand, within OLJFJH_02100at 369.021 kb on - strand, within OLJFJH_02100at 369.123 kb on - strand, within OLJFJH_02100at 369.223 kb on + strand, within OLJFJH_02100at 369.224 kb on - strand, within OLJFJH_02100at 369.363 kb on + strand, within OLJFJH_02100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
remove
366,799 + OLJFJH_02080 0.58 -0.1
366,950 + OLJFJH_02080 0.77 -0.5
366,967 + OLJFJH_02080 0.79 -0.9
366,968 - OLJFJH_02080 0.80 -1.1
367,034 + OLJFJH_02080 0.88 -1.6
367,060 - -1.3
367,152 - -0.3
367,152 - +0.5
367,196 + -1.6
367,280 + OLJFJH_02085 0.17 -1.4
367,280 + OLJFJH_02085 0.17 +0.5
367,521 - OLJFJH_02085 0.84 +0.9
367,532 + OLJFJH_02085 0.87 -0.0
367,565 - +0.1
367,579 + +0.2
367,579 + +0.4
367,717 + OLJFJH_02090 0.12 -0.6
367,717 + OLJFJH_02090 0.12 -0.2
367,717 + OLJFJH_02090 0.12 -0.8
367,717 + OLJFJH_02090 0.12 -0.1
367,764 - OLJFJH_02090 0.18 -0.4
367,764 - OLJFJH_02090 0.18 -1.1
367,808 + OLJFJH_02090 0.23 -0.5
367,842 + OLJFJH_02090 0.28 +0.9
367,842 + OLJFJH_02090 0.28 -0.2
367,843 - OLJFJH_02090 0.28 -0.8
367,843 - OLJFJH_02090 0.28 -1.3
367,870 + OLJFJH_02090 0.31 -0.8
367,870 + OLJFJH_02090 0.31 -0.3
367,871 - OLJFJH_02090 0.31 -1.0
367,878 + OLJFJH_02090 0.32 -1.1
367,879 - OLJFJH_02090 0.32 -1.8
367,956 + OLJFJH_02090 0.42 -0.5
367,956 + OLJFJH_02090 0.42 +0.4
367,956 + OLJFJH_02090 0.42 -0.7
367,956 + OLJFJH_02090 0.42 +0.1
367,956 + OLJFJH_02090 0.42 -0.4
367,956 + OLJFJH_02090 0.42 -0.9
367,957 - OLJFJH_02090 0.42 -1.3
367,957 - OLJFJH_02090 0.42 +0.1
367,983 + OLJFJH_02090 0.46 -0.5
368,118 + OLJFJH_02090 0.63 -0.1
368,147 + OLJFJH_02090 0.67 -0.8
368,147 + OLJFJH_02090 0.67 +0.2
368,183 - OLJFJH_02090 0.71 -0.5
368,274 + OLJFJH_02090 0.83 -1.3
368,275 - OLJFJH_02090 0.83 -1.0
368,390 - -0.9
368,390 - -1.6
368,482 - OLJFJH_02095 0.17 +0.1
368,537 + OLJFJH_02095 0.31 -0.6
368,538 - OLJFJH_02095 0.32 -0.1
368,538 - OLJFJH_02095 0.32 +0.1
368,634 + OLJFJH_02095 0.58 +0.3
368,635 - OLJFJH_02095 0.58 -0.5
368,635 - OLJFJH_02095 0.58 +0.4
368,649 - OLJFJH_02095 0.62 -1.9
368,750 + OLJFJH_02095 0.89 +0.4
368,750 + OLJFJH_02095 0.89 -0.2
368,776 + +0.0
368,811 + +0.3
368,901 - +0.2
369,020 + OLJFJH_02100 0.22 +1.1
369,021 - OLJFJH_02100 0.22 +0.1
369,123 - OLJFJH_02100 0.32 +0.3
369,223 + OLJFJH_02100 0.42 -0.5
369,224 - OLJFJH_02100 0.42 -0.1
369,363 + OLJFJH_02100 0.56 -1.3

Or see this region's nucleotide sequence