Strain Fitness in Erwinia amylovora T8 around OLJFJH_01970

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01965 and OLJFJH_01970 are separated by 47 nucleotidesOLJFJH_01970 and OLJFJH_01975 are separated by 15 nucleotides OLJFJH_01965: OLJFJH_01965 - PepSY-associated TM region, at 346,713 to 348,113 _01965 OLJFJH_01970: OLJFJH_01970 - nucleoside hydrolase, at 348,161 to 349,147 _01970 OLJFJH_01975: OLJFJH_01975 - LacI family transcriptional regulator, at 349,163 to 350,179 _01975 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 347.205 kb on + strand, within OLJFJH_01965at 347.206 kb on - strand, within OLJFJH_01965at 347.206 kb on - strand, within OLJFJH_01965at 347.206 kb on - strand, within OLJFJH_01965at 347.430 kb on - strand, within OLJFJH_01965at 347.554 kb on + strand, within OLJFJH_01965at 347.555 kb on - strand, within OLJFJH_01965at 347.684 kb on - strand, within OLJFJH_01965at 347.920 kb on + strand, within OLJFJH_01965at 348.034 kb on + strandat 348.183 kb on + strandat 348.184 kb on - strandat 348.184 kb on - strandat 348.184 kb on - strandat 348.184 kb on - strandat 348.332 kb on + strand, within OLJFJH_01970at 348.332 kb on + strand, within OLJFJH_01970at 348.332 kb on + strand, within OLJFJH_01970at 348.333 kb on - strand, within OLJFJH_01970at 348.346 kb on - strand, within OLJFJH_01970at 348.346 kb on - strand, within OLJFJH_01970at 348.404 kb on + strand, within OLJFJH_01970at 348.441 kb on + strand, within OLJFJH_01970at 348.441 kb on + strand, within OLJFJH_01970at 348.505 kb on + strand, within OLJFJH_01970at 348.654 kb on - strand, within OLJFJH_01970at 348.728 kb on - strand, within OLJFJH_01970at 348.921 kb on - strand, within OLJFJH_01970at 349.136 kb on + strandat 349.137 kb on - strandat 349.137 kb on - strandat 349.142 kb on + strandat 349.142 kb on + strandat 349.143 kb on - strandat 349.156 kb on - strandat 349.156 kb on - strandat 349.321 kb on - strand, within OLJFJH_01975at 349.403 kb on - strand, within OLJFJH_01975at 349.504 kb on - strand, within OLJFJH_01975at 349.504 kb on - strand, within OLJFJH_01975at 349.546 kb on - strand, within OLJFJH_01975at 349.591 kb on + strand, within OLJFJH_01975at 349.591 kb on + strand, within OLJFJH_01975at 349.695 kb on - strand, within OLJFJH_01975at 349.695 kb on - strand, within OLJFJH_01975at 349.695 kb on - strand, within OLJFJH_01975at 349.768 kb on + strand, within OLJFJH_01975at 349.769 kb on - strand, within OLJFJH_01975at 349.770 kb on + strand, within OLJFJH_01975at 349.770 kb on + strand, within OLJFJH_01975at 349.770 kb on + strand, within OLJFJH_01975at 349.770 kb on + strand, within OLJFJH_01975at 349.771 kb on - strand, within OLJFJH_01975at 349.771 kb on - strand, within OLJFJH_01975at 349.771 kb on - strand, within OLJFJH_01975at 349.795 kb on - strand, within OLJFJH_01975at 349.795 kb on - strand, within OLJFJH_01975at 349.798 kb on + strand, within OLJFJH_01975at 349.799 kb on - strand, within OLJFJH_01975at 349.799 kb on - strand, within OLJFJH_01975at 349.945 kb on + strand, within OLJFJH_01975at 349.945 kb on + strand, within OLJFJH_01975at 349.951 kb on + strand, within OLJFJH_01975at 349.951 kb on + strand, within OLJFJH_01975at 349.952 kb on - strand, within OLJFJH_01975at 350.100 kb on + strandat 350.100 kb on + strandat 350.100 kb on + strandat 350.100 kb on + strandat 350.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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347,205 + OLJFJH_01965 0.35 -1.1
347,206 - OLJFJH_01965 0.35 -1.5
347,206 - OLJFJH_01965 0.35 -0.8
347,206 - OLJFJH_01965 0.35 -0.2
347,430 - OLJFJH_01965 0.51 -2.8
347,554 + OLJFJH_01965 0.60 -0.3
347,555 - OLJFJH_01965 0.60 -1.4
347,684 - OLJFJH_01965 0.69 -1.6
347,920 + OLJFJH_01965 0.86 -0.2
348,034 + -0.6
348,183 + +0.6
348,184 - -0.2
348,184 - -0.0
348,184 - -0.1
348,184 - -0.3
348,332 + OLJFJH_01970 0.17 -0.6
348,332 + OLJFJH_01970 0.17 -0.3
348,332 + OLJFJH_01970 0.17 -1.3
348,333 - OLJFJH_01970 0.17 +0.1
348,346 - OLJFJH_01970 0.19 -0.1
348,346 - OLJFJH_01970 0.19 +0.9
348,404 + OLJFJH_01970 0.25 -0.3
348,441 + OLJFJH_01970 0.28 -0.3
348,441 + OLJFJH_01970 0.28 -0.1
348,505 + OLJFJH_01970 0.35 -0.8
348,654 - OLJFJH_01970 0.50 -0.5
348,728 - OLJFJH_01970 0.57 -0.5
348,921 - OLJFJH_01970 0.77 -0.1
349,136 + -0.1
349,137 - +0.1
349,137 - -0.4
349,142 + -0.8
349,142 + +0.1
349,143 - +0.1
349,156 - +1.4
349,156 - -0.1
349,321 - OLJFJH_01975 0.16 +0.2
349,403 - OLJFJH_01975 0.24 -1.2
349,504 - OLJFJH_01975 0.34 +0.8
349,504 - OLJFJH_01975 0.34 -0.1
349,546 - OLJFJH_01975 0.38 -0.2
349,591 + OLJFJH_01975 0.42 -0.7
349,591 + OLJFJH_01975 0.42 -0.3
349,695 - OLJFJH_01975 0.52 +0.1
349,695 - OLJFJH_01975 0.52 +0.0
349,695 - OLJFJH_01975 0.52 -0.2
349,768 + OLJFJH_01975 0.59 +0.0
349,769 - OLJFJH_01975 0.60 +0.4
349,770 + OLJFJH_01975 0.60 -0.8
349,770 + OLJFJH_01975 0.60 +0.3
349,770 + OLJFJH_01975 0.60 -0.2
349,770 + OLJFJH_01975 0.60 -0.1
349,771 - OLJFJH_01975 0.60 +0.0
349,771 - OLJFJH_01975 0.60 -0.3
349,771 - OLJFJH_01975 0.60 -1.1
349,795 - OLJFJH_01975 0.62 -0.1
349,795 - OLJFJH_01975 0.62 +0.1
349,798 + OLJFJH_01975 0.62 -0.4
349,799 - OLJFJH_01975 0.63 -0.3
349,799 - OLJFJH_01975 0.63 +0.4
349,945 + OLJFJH_01975 0.77 -0.5
349,945 + OLJFJH_01975 0.77 -0.3
349,951 + OLJFJH_01975 0.77 -0.2
349,951 + OLJFJH_01975 0.77 +0.2
349,952 - OLJFJH_01975 0.78 +1.1
350,100 + +0.5
350,100 + -0.2
350,100 + +0.1
350,100 + +2.5
350,101 - +0.6

Or see this region's nucleotide sequence