Strain Fitness in Erwinia amylovora T8 around OLJFJH_01965

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01955 and OLJFJH_01960 are separated by 218 nucleotidesOLJFJH_01960 and OLJFJH_01965 are separated by 76 nucleotidesOLJFJH_01965 and OLJFJH_01970 are separated by 47 nucleotides OLJFJH_01955: OLJFJH_01955 - Putative metabolite transport protein, at 345,528 to 345,971 _01955 OLJFJH_01960: OLJFJH_01960 - DUF2946 domain-containing protein, at 346,190 to 346,636 _01960 OLJFJH_01965: OLJFJH_01965 - PepSY-associated TM region, at 346,713 to 348,113 _01965 OLJFJH_01970: OLJFJH_01970 - nucleoside hydrolase, at 348,161 to 349,147 _01970 Position (kb) 346 347 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1at 345.808 kb on + strand, within OLJFJH_01955at 345.815 kb on - strand, within OLJFJH_01955at 345.815 kb on - strand, within OLJFJH_01955at 345.815 kb on - strand, within OLJFJH_01955at 345.886 kb on - strand, within OLJFJH_01955at 346.087 kb on + strandat 346.088 kb on - strandat 346.107 kb on + strandat 346.123 kb on + strandat 346.133 kb on + strandat 346.134 kb on - strandat 346.171 kb on - strandat 346.367 kb on - strand, within OLJFJH_01960at 346.515 kb on + strand, within OLJFJH_01960at 346.515 kb on + strand, within OLJFJH_01960at 346.515 kb on + strand, within OLJFJH_01960at 346.646 kb on + strandat 346.646 kb on + strandat 346.647 kb on - strandat 346.681 kb on + strandat 346.681 kb on + strandat 346.682 kb on - strandat 346.712 kb on + strandat 346.713 kb on - strandat 346.713 kb on - strandat 346.713 kb on - strandat 346.854 kb on + strand, within OLJFJH_01965at 346.854 kb on + strand, within OLJFJH_01965at 346.855 kb on - strand, within OLJFJH_01965at 346.855 kb on - strand, within OLJFJH_01965at 347.137 kb on + strand, within OLJFJH_01965at 347.137 kb on + strand, within OLJFJH_01965at 347.137 kb on + strand, within OLJFJH_01965at 347.138 kb on - strand, within OLJFJH_01965at 347.138 kb on - strand, within OLJFJH_01965at 347.138 kb on - strand, within OLJFJH_01965at 347.140 kb on + strand, within OLJFJH_01965at 347.205 kb on + strand, within OLJFJH_01965at 347.206 kb on - strand, within OLJFJH_01965at 347.206 kb on - strand, within OLJFJH_01965at 347.206 kb on - strand, within OLJFJH_01965at 347.430 kb on - strand, within OLJFJH_01965at 347.554 kb on + strand, within OLJFJH_01965at 347.555 kb on - strand, within OLJFJH_01965at 347.684 kb on - strand, within OLJFJH_01965at 347.920 kb on + strand, within OLJFJH_01965at 348.034 kb on + strandat 348.183 kb on + strandat 348.184 kb on - strandat 348.184 kb on - strandat 348.184 kb on - strandat 348.184 kb on - strandat 348.332 kb on + strand, within OLJFJH_01970at 348.332 kb on + strand, within OLJFJH_01970at 348.332 kb on + strand, within OLJFJH_01970at 348.333 kb on - strand, within OLJFJH_01970at 348.346 kb on - strand, within OLJFJH_01970at 348.346 kb on - strand, within OLJFJH_01970at 348.404 kb on + strand, within OLJFJH_01970at 348.441 kb on + strand, within OLJFJH_01970at 348.441 kb on + strand, within OLJFJH_01970at 348.505 kb on + strand, within OLJFJH_01970at 348.654 kb on - strand, within OLJFJH_01970at 348.728 kb on - strand, within OLJFJH_01970at 348.921 kb on - strand, within OLJFJH_01970

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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345,808 + OLJFJH_01955 0.63 -0.2
345,815 - OLJFJH_01955 0.65 -0.6
345,815 - OLJFJH_01955 0.65 +0.2
345,815 - OLJFJH_01955 0.65 -0.5
345,886 - OLJFJH_01955 0.81 +0.8
346,087 + -0.5
346,088 - +0.1
346,107 + +0.0
346,123 + +0.7
346,133 + +0.2
346,134 - -0.6
346,171 - -1.0
346,367 - OLJFJH_01960 0.40 -1.5
346,515 + OLJFJH_01960 0.73 -0.3
346,515 + OLJFJH_01960 0.73 -0.1
346,515 + OLJFJH_01960 0.73 -0.2
346,646 + +0.5
346,646 + -0.3
346,647 - -1.0
346,681 + +0.3
346,681 + -0.2
346,682 - -1.5
346,712 + -0.3
346,713 - -0.8
346,713 - -0.4
346,713 - +0.3
346,854 + OLJFJH_01965 0.10 -1.0
346,854 + OLJFJH_01965 0.10 -1.0
346,855 - OLJFJH_01965 0.10 -0.5
346,855 - OLJFJH_01965 0.10 +0.1
347,137 + OLJFJH_01965 0.30 -0.2
347,137 + OLJFJH_01965 0.30 -1.0
347,137 + OLJFJH_01965 0.30 -0.6
347,138 - OLJFJH_01965 0.30 +1.4
347,138 - OLJFJH_01965 0.30 +0.3
347,138 - OLJFJH_01965 0.30 -0.2
347,140 + OLJFJH_01965 0.30 +0.1
347,205 + OLJFJH_01965 0.35 -1.1
347,206 - OLJFJH_01965 0.35 -1.5
347,206 - OLJFJH_01965 0.35 -0.8
347,206 - OLJFJH_01965 0.35 -0.2
347,430 - OLJFJH_01965 0.51 -2.8
347,554 + OLJFJH_01965 0.60 -0.3
347,555 - OLJFJH_01965 0.60 -1.4
347,684 - OLJFJH_01965 0.69 -1.6
347,920 + OLJFJH_01965 0.86 -0.2
348,034 + -0.6
348,183 + +0.6
348,184 - -0.2
348,184 - -0.0
348,184 - -0.1
348,184 - -0.3
348,332 + OLJFJH_01970 0.17 -0.6
348,332 + OLJFJH_01970 0.17 -0.3
348,332 + OLJFJH_01970 0.17 -1.3
348,333 - OLJFJH_01970 0.17 +0.1
348,346 - OLJFJH_01970 0.19 -0.1
348,346 - OLJFJH_01970 0.19 +0.9
348,404 + OLJFJH_01970 0.25 -0.3
348,441 + OLJFJH_01970 0.28 -0.3
348,441 + OLJFJH_01970 0.28 -0.1
348,505 + OLJFJH_01970 0.35 -0.8
348,654 - OLJFJH_01970 0.50 -0.5
348,728 - OLJFJH_01970 0.57 -0.5
348,921 - OLJFJH_01970 0.77 -0.1

Or see this region's nucleotide sequence