Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01840 and OLJFJH_01845 are separated by 137 nucleotides OLJFJH_01845 and OLJFJH_01850 overlap by 16 nucleotides OLJFJH_01850 and OLJFJH_01855 are separated by 78 nucleotides OLJFJH_01855 and OLJFJH_01860 are separated by 104 nucleotides OLJFJH_01860 and OLJFJH_01865 are separated by 68 nucleotides
OLJFJH_01840: OLJFJH_01840 - type VI secretion protein, at 325,873 to 326,280
_01840
OLJFJH_01845: OLJFJH_01845 - type VI secretion protein, at 326,418 to 326,786
_01845
OLJFJH_01850: OLJFJH_01850 - Putative cytoplasmic protein, at 326,771 to 327,250
_01850
OLJFJH_01855: OLJFJH_01855 - type VI secretion system tube protein Hcp, at 327,329 to 327,811
_01855
OLJFJH_01860: OLJFJH_01860 - hypothetical protein, at 327,916 to 328,020
_01860
OLJFJH_01865: OLJFJH_01865 - type VI secretion system contractile sheath large subunit, at 328,089 to 329,588
_01865
Position (kb) 326
327
328 Strain fitness (log2 ratio) -1
0
1 at 325.828 kb on - strand at 326.167 kb on - strand, within OLJFJH_01840 at 326.293 kb on - strand at 326.328 kb on + strand at 326.363 kb on + strand at 326.709 kb on - strand, within OLJFJH_01845 at 326.787 kb on - strand at 326.974 kb on + strand, within OLJFJH_01850 at 327.003 kb on - strand, within OLJFJH_01850 at 327.442 kb on - strand, within OLJFJH_01855 at 327.515 kb on - strand, within OLJFJH_01855 at 327.517 kb on + strand, within OLJFJH_01855 at 327.517 kb on + strand, within OLJFJH_01855 at 327.518 kb on - strand, within OLJFJH_01855 at 327.550 kb on + strand, within OLJFJH_01855 at 327.566 kb on + strand, within OLJFJH_01855 at 327.567 kb on - strand, within OLJFJH_01855 at 327.576 kb on - strand, within OLJFJH_01855 at 327.576 kb on - strand, within OLJFJH_01855 at 327.576 kb on - strand, within OLJFJH_01855 at 327.623 kb on - strand, within OLJFJH_01855 at 327.694 kb on + strand, within OLJFJH_01855 at 327.763 kb on + strand at 327.795 kb on + strand at 327.796 kb on - strand at 327.796 kb on - strand at 327.800 kb on - strand at 327.819 kb on + strand at 327.820 kb on - strand at 327.829 kb on - strand at 327.833 kb on - strand at 327.881 kb on + strand at 327.899 kb on + strand at 327.922 kb on - strand at 327.933 kb on - strand, within OLJFJH_01860 at 327.937 kb on - strand, within OLJFJH_01860 at 328.060 kb on - strand at 328.070 kb on + strand at 328.071 kb on - strand at 328.075 kb on - strand at 328.162 kb on + strand at 328.192 kb on + strand at 328.192 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1) remove 325,828 - -0.5 326,167 - OLJFJH_01840 0.72 -0.3 326,293 - +0.2 326,328 + +0.2 326,363 + -0.2 326,709 - OLJFJH_01845 0.79 +0.3 326,787 - +0.1 326,974 + OLJFJH_01850 0.42 -0.4 327,003 - OLJFJH_01850 0.48 -0.4 327,442 - OLJFJH_01855 0.23 +0.3 327,515 - OLJFJH_01855 0.39 -0.3 327,517 + OLJFJH_01855 0.39 +0.5 327,517 + OLJFJH_01855 0.39 +0.0 327,518 - OLJFJH_01855 0.39 -0.2 327,550 + OLJFJH_01855 0.46 +0.3 327,566 + OLJFJH_01855 0.49 +0.2 327,567 - OLJFJH_01855 0.49 +1.3 327,576 - OLJFJH_01855 0.51 +0.0 327,576 - OLJFJH_01855 0.51 -0.8 327,576 - OLJFJH_01855 0.51 -0.2 327,623 - OLJFJH_01855 0.61 -0.1 327,694 + OLJFJH_01855 0.76 -0.2 327,763 + -0.4 327,795 + +0.5 327,796 - -0.3 327,796 - +0.0 327,800 - -0.1 327,819 + -0.1 327,820 - -0.9 327,829 - +0.1 327,833 - -0.2 327,881 + -0.0 327,899 + -0.1 327,922 - +0.1 327,933 - OLJFJH_01860 0.16 -0.5 327,937 - OLJFJH_01860 0.20 -0.2 328,060 - -0.1 328,070 + -0.2 328,071 - -0.1 328,075 - -0.0 328,162 + +0.6 328,192 + +0.5 328,192 + +0.1
Or see this region's nucleotide sequence