Strain Fitness in Erwinia amylovora T8 around OLJFJH_01640

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01635 and OLJFJH_01640 are separated by 102 nucleotidesOLJFJH_01640 and OLJFJH_01645 are separated by 122 nucleotides OLJFJH_01635: OLJFJH_01635 - patatin family protein, at 275,703 to 276,755 _01635 OLJFJH_01640: OLJFJH_01640 - UPF0391 membrane protein ETA_06630, at 276,858 to 277,019 _01640 OLJFJH_01645: OLJFJH_01645 - molecular chaperone OsmY, at 277,142 to 277,756 _01645 Position (kb) 276 277 278Strain fitness (log2 ratio) -1 0 1at 275.972 kb on + strand, within OLJFJH_01635at 275.972 kb on + strand, within OLJFJH_01635at 275.972 kb on + strand, within OLJFJH_01635at 275.973 kb on - strand, within OLJFJH_01635at 275.973 kb on - strand, within OLJFJH_01635at 275.973 kb on - strand, within OLJFJH_01635at 275.973 kb on - strand, within OLJFJH_01635at 275.973 kb on - strand, within OLJFJH_01635at 275.973 kb on - strand, within OLJFJH_01635at 275.976 kb on + strand, within OLJFJH_01635at 275.977 kb on - strand, within OLJFJH_01635at 275.977 kb on - strand, within OLJFJH_01635at 275.977 kb on - strand, within OLJFJH_01635at 275.997 kb on - strand, within OLJFJH_01635at 276.019 kb on + strand, within OLJFJH_01635at 276.020 kb on - strand, within OLJFJH_01635at 276.150 kb on - strand, within OLJFJH_01635at 276.280 kb on - strand, within OLJFJH_01635at 276.314 kb on - strand, within OLJFJH_01635at 276.350 kb on + strand, within OLJFJH_01635at 276.350 kb on + strand, within OLJFJH_01635at 276.350 kb on + strand, within OLJFJH_01635at 276.351 kb on - strand, within OLJFJH_01635at 276.352 kb on + strand, within OLJFJH_01635at 276.352 kb on + strand, within OLJFJH_01635at 276.352 kb on + strand, within OLJFJH_01635at 276.352 kb on + strand, within OLJFJH_01635at 276.492 kb on - strand, within OLJFJH_01635at 276.509 kb on + strand, within OLJFJH_01635at 276.510 kb on - strand, within OLJFJH_01635at 276.510 kb on - strand, within OLJFJH_01635at 276.513 kb on + strand, within OLJFJH_01635at 276.747 kb on + strandat 276.747 kb on + strandat 276.774 kb on + strandat 276.775 kb on - strandat 276.861 kb on + strandat 276.862 kb on - strandat 276.862 kb on - strandat 276.862 kb on - strandat 276.862 kb on - strandat 276.862 kb on - strandat 276.862 kb on - strandat 276.862 kb on - strandat 276.899 kb on + strand, within OLJFJH_01640at 276.926 kb on + strand, within OLJFJH_01640at 276.966 kb on + strand, within OLJFJH_01640at 276.990 kb on - strand, within OLJFJH_01640at 277.001 kb on + strand, within OLJFJH_01640at 277.002 kb on - strand, within OLJFJH_01640at 277.005 kb on - strandat 277.019 kb on + strandat 277.019 kb on + strandat 277.020 kb on - strandat 277.020 kb on - strandat 277.031 kb on + strandat 277.032 kb on - strandat 277.058 kb on + strandat 277.125 kb on - strandat 277.520 kb on - strand, within OLJFJH_01645at 277.591 kb on + strand, within OLJFJH_01645at 277.591 kb on + strand, within OLJFJH_01645at 277.661 kb on - strand, within OLJFJH_01645at 277.713 kb on - strandat 277.744 kb on + strandat 277.898 kb on + strandat 277.899 kb on - strandat 277.900 kb on + strandat 277.900 kb on + strandat 277.901 kb on - strandat 277.901 kb on - strandat 277.901 kb on - strandat 277.901 kb on - strandat 277.901 kb on - strandat 277.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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275,972 + OLJFJH_01635 0.26 +0.1
275,972 + OLJFJH_01635 0.26 +0.4
275,972 + OLJFJH_01635 0.26 +0.2
275,973 - OLJFJH_01635 0.26 -0.4
275,973 - OLJFJH_01635 0.26 -0.2
275,973 - OLJFJH_01635 0.26 +0.1
275,973 - OLJFJH_01635 0.26 -0.6
275,973 - OLJFJH_01635 0.26 +0.1
275,973 - OLJFJH_01635 0.26 +0.2
275,976 + OLJFJH_01635 0.26 -0.1
275,977 - OLJFJH_01635 0.26 -0.0
275,977 - OLJFJH_01635 0.26 -0.3
275,977 - OLJFJH_01635 0.26 -0.1
275,997 - OLJFJH_01635 0.28 -0.1
276,019 + OLJFJH_01635 0.30 -0.2
276,020 - OLJFJH_01635 0.30 -0.6
276,150 - OLJFJH_01635 0.42 +0.6
276,280 - OLJFJH_01635 0.55 -0.1
276,314 - OLJFJH_01635 0.58 -0.2
276,350 + OLJFJH_01635 0.61 -0.1
276,350 + OLJFJH_01635 0.61 -0.7
276,350 + OLJFJH_01635 0.61 -0.4
276,351 - OLJFJH_01635 0.62 +0.1
276,352 + OLJFJH_01635 0.62 -0.0
276,352 + OLJFJH_01635 0.62 +0.2
276,352 + OLJFJH_01635 0.62 -0.6
276,352 + OLJFJH_01635 0.62 +0.1
276,492 - OLJFJH_01635 0.75 -0.0
276,509 + OLJFJH_01635 0.77 -0.7
276,510 - OLJFJH_01635 0.77 +0.2
276,510 - OLJFJH_01635 0.77 -0.0
276,513 + OLJFJH_01635 0.77 +0.5
276,747 + +0.1
276,747 + +0.1
276,774 + -0.1
276,775 - -0.4
276,861 + +0.2
276,862 - +0.3
276,862 - +0.8
276,862 - -0.3
276,862 - +0.4
276,862 - +0.5
276,862 - -0.3
276,862 - -0.1
276,899 + OLJFJH_01640 0.25 -0.9
276,926 + OLJFJH_01640 0.42 +0.8
276,966 + OLJFJH_01640 0.67 -0.5
276,990 - OLJFJH_01640 0.81 -1.1
277,001 + OLJFJH_01640 0.88 -0.1
277,002 - OLJFJH_01640 0.89 -0.6
277,005 - +0.7
277,019 + -0.0
277,019 + -0.1
277,020 - -0.1
277,020 - +0.3
277,031 + -0.3
277,032 - +0.2
277,058 + +0.3
277,125 - +0.0
277,520 - OLJFJH_01645 0.61 -0.4
277,591 + OLJFJH_01645 0.73 +1.5
277,591 + OLJFJH_01645 0.73 +0.5
277,661 - OLJFJH_01645 0.84 +0.1
277,713 - -0.2
277,744 + +0.0
277,898 + -0.3
277,899 - -0.2
277,900 + +0.1
277,900 + +0.0
277,901 - -0.5
277,901 - -0.7
277,901 - -0.1
277,901 - -0.1
277,901 - +0.2
277,932 - -0.4

Or see this region's nucleotide sequence