Strain Fitness in Erwinia amylovora T8 around OLJFJH_01595

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01590 and OLJFJH_01595 are separated by 9 nucleotidesOLJFJH_01595 and OLJFJH_01600 are separated by 158 nucleotidesOLJFJH_01600 and OLJFJH_01605 are separated by 20 nucleotides OLJFJH_01590: OLJFJH_01590 - DNA repair protein RadA, at 265,668 to 267,050 _01590 OLJFJH_01595: OLJFJH_01595 - phosphoserine phosphatase, at 267,060 to 268,037 _01595 OLJFJH_01600: OLJFJH_01600 - YtjB family periplasmic protein, at 268,196 to 268,855 _01600 OLJFJH_01605: OLJFJH_01605 - type II toxin-antitoxin system HipA family toxin YjjJ, at 268,876 to 270,216 _01605 Position (kb) 267 268 269Strain fitness (log2 ratio) -2 -1 0 1at 266.098 kb on - strand, within OLJFJH_01590at 266.187 kb on + strand, within OLJFJH_01590at 266.187 kb on + strand, within OLJFJH_01590at 266.188 kb on - strand, within OLJFJH_01590at 266.280 kb on - strand, within OLJFJH_01590at 266.280 kb on - strand, within OLJFJH_01590at 266.294 kb on + strand, within OLJFJH_01590at 266.342 kb on + strand, within OLJFJH_01590at 266.343 kb on - strand, within OLJFJH_01590at 266.343 kb on - strand, within OLJFJH_01590at 266.594 kb on + strand, within OLJFJH_01590at 266.594 kb on + strand, within OLJFJH_01590at 266.595 kb on - strand, within OLJFJH_01590at 266.723 kb on + strand, within OLJFJH_01590at 267.128 kb on + strandat 267.293 kb on - strand, within OLJFJH_01595at 267.386 kb on + strand, within OLJFJH_01595at 267.387 kb on - strand, within OLJFJH_01595at 267.397 kb on + strand, within OLJFJH_01595at 267.398 kb on - strand, within OLJFJH_01595at 267.507 kb on + strand, within OLJFJH_01595at 267.508 kb on - strand, within OLJFJH_01595at 267.656 kb on + strand, within OLJFJH_01595at 267.657 kb on - strand, within OLJFJH_01595at 267.657 kb on - strand, within OLJFJH_01595at 267.909 kb on + strand, within OLJFJH_01595at 268.038 kb on + strandat 268.049 kb on + strandat 268.087 kb on - strandat 268.089 kb on + strandat 268.090 kb on - strandat 268.135 kb on + strandat 268.135 kb on + strandat 268.136 kb on - strandat 268.136 kb on - strandat 268.329 kb on + strand, within OLJFJH_01600at 268.329 kb on + strand, within OLJFJH_01600at 268.330 kb on - strand, within OLJFJH_01600at 268.330 kb on - strand, within OLJFJH_01600at 268.346 kb on - strand, within OLJFJH_01600at 268.391 kb on - strand, within OLJFJH_01600at 268.513 kb on - strand, within OLJFJH_01600at 268.562 kb on + strand, within OLJFJH_01600at 268.563 kb on - strand, within OLJFJH_01600at 268.581 kb on + strand, within OLJFJH_01600at 268.582 kb on - strand, within OLJFJH_01600at 268.598 kb on - strand, within OLJFJH_01600at 268.598 kb on - strand, within OLJFJH_01600at 268.673 kb on - strand, within OLJFJH_01600at 268.684 kb on + strand, within OLJFJH_01600at 268.684 kb on + strand, within OLJFJH_01600at 268.986 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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266,098 - OLJFJH_01590 0.31 -1.5
266,187 + OLJFJH_01590 0.38 -0.0
266,187 + OLJFJH_01590 0.38 +0.1
266,188 - OLJFJH_01590 0.38 -0.3
266,280 - OLJFJH_01590 0.44 -0.4
266,280 - OLJFJH_01590 0.44 -0.1
266,294 + OLJFJH_01590 0.45 -0.0
266,342 + OLJFJH_01590 0.49 -0.9
266,343 - OLJFJH_01590 0.49 -1.6
266,343 - OLJFJH_01590 0.49 +0.8
266,594 + OLJFJH_01590 0.67 +0.4
266,594 + OLJFJH_01590 0.67 +0.2
266,595 - OLJFJH_01590 0.67 -0.2
266,723 + OLJFJH_01590 0.76 +0.4
267,128 + -0.4
267,293 - OLJFJH_01595 0.24 -1.1
267,386 + OLJFJH_01595 0.33 -1.0
267,387 - OLJFJH_01595 0.33 -1.9
267,397 + OLJFJH_01595 0.34 -1.1
267,398 - OLJFJH_01595 0.35 +0.4
267,507 + OLJFJH_01595 0.46 +0.1
267,508 - OLJFJH_01595 0.46 -1.0
267,656 + OLJFJH_01595 0.61 -0.4
267,657 - OLJFJH_01595 0.61 -2.3
267,657 - OLJFJH_01595 0.61 -0.3
267,909 + OLJFJH_01595 0.87 -1.1
268,038 + -2.0
268,049 + -1.0
268,087 - +0.3
268,089 + -0.5
268,090 - +0.4
268,135 + -0.1
268,135 + -0.0
268,136 - -0.1
268,136 - -0.1
268,329 + OLJFJH_01600 0.20 -0.3
268,329 + OLJFJH_01600 0.20 +0.1
268,330 - OLJFJH_01600 0.20 -0.8
268,330 - OLJFJH_01600 0.20 -0.2
268,346 - OLJFJH_01600 0.23 -0.2
268,391 - OLJFJH_01600 0.30 -0.0
268,513 - OLJFJH_01600 0.48 +0.2
268,562 + OLJFJH_01600 0.55 -0.2
268,563 - OLJFJH_01600 0.56 -0.9
268,581 + OLJFJH_01600 0.58 -0.9
268,582 - OLJFJH_01600 0.58 -0.1
268,598 - OLJFJH_01600 0.61 -0.6
268,598 - OLJFJH_01600 0.61 -0.1
268,673 - OLJFJH_01600 0.72 -0.3
268,684 + OLJFJH_01600 0.74 -0.3
268,684 + OLJFJH_01600 0.74 +0.4
268,986 + +0.4

Or see this region's nucleotide sequence