Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01360 and OLJFJH_01365 overlap by 11 nucleotides OLJFJH_01365 and OLJFJH_01370 overlap by 8 nucleotides OLJFJH_01370 and OLJFJH_01375 overlap by 4 nucleotides OLJFJH_01375 and OLJFJH_01380 are separated by 13 nucleotides
OLJFJH_01360: OLJFJH_01360 - peptidylprolyl isomerase SurA, at 214,778 to 216,073
_01360
OLJFJH_01365: OLJFJH_01365 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 216,063 to 217,055
_01365
OLJFJH_01370: OLJFJH_01370 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 217,048 to 217,875
_01370
OLJFJH_01375: OLJFJH_01375 - Co2+/Mg2+ efflux protein ApaG, at 217,872 to 218,249
_01375
OLJFJH_01380: OLJFJH_01380 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 218,263 to 219,087
_01380
Position (kb) 217
218 Strain fitness (log2 ratio) -2
-1
0
1 at 216.644 kb on + strand, within OLJFJH_01365 at 216.855 kb on + strand, within OLJFJH_01365 at 216.855 kb on + strand, within OLJFJH_01365 at 216.880 kb on + strand, within OLJFJH_01365 at 217.037 kb on + strand at 217.037 kb on + strand at 217.120 kb on - strand at 217.228 kb on - strand, within OLJFJH_01370 at 217.428 kb on + strand, within OLJFJH_01370 at 217.428 kb on + strand, within OLJFJH_01370 at 217.432 kb on + strand, within OLJFJH_01370 at 217.432 kb on + strand, within OLJFJH_01370 at 217.432 kb on + strand, within OLJFJH_01370 at 217.452 kb on + strand, within OLJFJH_01370 at 217.546 kb on + strand, within OLJFJH_01370 at 217.705 kb on - strand, within OLJFJH_01370 at 217.830 kb on + strand at 217.914 kb on + strand, within OLJFJH_01375 at 217.915 kb on - strand, within OLJFJH_01375 at 217.915 kb on - strand, within OLJFJH_01375 at 217.951 kb on - strand, within OLJFJH_01375 at 217.962 kb on + strand, within OLJFJH_01375 at 217.963 kb on - strand, within OLJFJH_01375 at 217.963 kb on - strand, within OLJFJH_01375 at 217.992 kb on - strand, within OLJFJH_01375 at 218.091 kb on - strand, within OLJFJH_01375 at 218.091 kb on - strand, within OLJFJH_01375 at 218.116 kb on - strand, within OLJFJH_01375 at 218.272 kb on + strand at 218.273 kb on - strand at 218.276 kb on + strand at 218.277 kb on - strand at 218.560 kb on - strand, within OLJFJH_01380 at 218.585 kb on + strand, within OLJFJH_01380 at 218.585 kb on + strand, within OLJFJH_01380 at 218.701 kb on - strand, within OLJFJH_01380 at 218.719 kb on - strand, within OLJFJH_01380 at 218.736 kb on + strand, within OLJFJH_01380 at 218.816 kb on - strand, within OLJFJH_01380
Per-strain Table
Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1) remove 216,644 + OLJFJH_01365 0.59 -0.0 216,855 + OLJFJH_01365 0.80 -0.6 216,855 + OLJFJH_01365 0.80 -0.0 216,880 + OLJFJH_01365 0.82 -0.6 217,037 + +0.6 217,037 + +0.2 217,120 - -1.0 217,228 - OLJFJH_01370 0.22 -0.0 217,428 + OLJFJH_01370 0.46 -0.5 217,428 + OLJFJH_01370 0.46 -0.3 217,432 + OLJFJH_01370 0.46 -0.3 217,432 + OLJFJH_01370 0.46 -0.2 217,432 + OLJFJH_01370 0.46 -0.4 217,452 + OLJFJH_01370 0.49 -0.6 217,546 + OLJFJH_01370 0.60 -1.0 217,705 - OLJFJH_01370 0.79 -1.5 217,830 + -2.0 217,914 + OLJFJH_01375 0.11 +0.3 217,915 - OLJFJH_01375 0.11 -0.2 217,915 - OLJFJH_01375 0.11 -0.3 217,951 - OLJFJH_01375 0.21 +0.0 217,962 + OLJFJH_01375 0.24 -0.6 217,963 - OLJFJH_01375 0.24 -0.9 217,963 - OLJFJH_01375 0.24 -0.8 217,992 - OLJFJH_01375 0.32 -0.1 218,091 - OLJFJH_01375 0.58 +0.2 218,091 - OLJFJH_01375 0.58 +0.2 218,116 - OLJFJH_01375 0.65 +0.2 218,272 + -0.2 218,273 - +0.7 218,276 + -0.1 218,277 - +0.8 218,560 - OLJFJH_01380 0.36 -0.4 218,585 + OLJFJH_01380 0.39 +0.3 218,585 + OLJFJH_01380 0.39 -0.2 218,701 - OLJFJH_01380 0.53 -0.6 218,719 - OLJFJH_01380 0.55 -0.5 218,736 + OLJFJH_01380 0.57 +0.2 218,816 - OLJFJH_01380 0.67 -0.3
Or see this region's nucleotide sequence